BOINC.Italy

Grafica

Nata a Napoli nel 1987, ha conseguito la laurea triennale in "Culture digitali e della comunicazione" e quella magistrale in "Informazione, editoria e giornalismo". Da sempre appassionata all'universo web,
ha conosciuto il calcolo distribuito e Boinc per caso, ma è stato amore a prima vista! Ecco perché ha volentieri collaborato in parte alla realizzazione grafica di alcune sezioni del sito, come loghi e banner vari,
medagliette di avanzamento di grado, loghi per maglie stampate, ecc. Nonostante il lavoro da giornalista e quello da web content manager, quando può contribuisce graficamente all'espansione di quel piccolo grande (e soprattutto socialmente indispensabile) mondo che è Boinc.Italy.

Valutazione attuale: 5 / 5

Gentili amici,

come molti di voi sapranno il progetto GPUGRID, nato e vissuto per anni grazie alle schede Nvidia, ha lanciato un applicativo di test per le schede video AMD.

Per poter provare questo nuovo applicativo, è necessario (oltre a possedere una scheda video AMD) configurare il proprio account nella seguente maniera:

Usa la CPU: si

Avviare applicazioni di test: si

Molecular Dynamics on AMD GPUs: yes

Use graphic processing unit (GPU) if avaiable: yes

Use central process unit (CPU): yes

Il client comincerà a scaricare le app per la vostra GPU, anche se noterete alcune incongruenze

1) Il client chiede lavoro per cpu, ma vengono scaricate wu per gpu

E' causato dal fatto che lo scheduler del server del progetto non è recentissimo, quindi hanno dovuto usare questo "trucchetto" per poter rilasciare lavoro per Opencl

2) L'app utilizzerà, oltre alla gpu, anche tutti i core cpu che troverà a sua disposizione. Il manager mostrerà, nella schermata, solo l'uso delle cpu (e non come, per esempio in poem, una scritta tipo 1cpu+1gpu).

Non preoccupatevi, anche questo è dovuto al "trucchetto" di cui sopra. Basta avviare gpu-z per vedere il reale utilizzo della gpu.

Buona scaccolata!!

Valutazione attuale: 5 / 5

Aree di ricerca
Trasformazioni equivalenti e partizionamenti di schemi-grafi di algoritmi di controllo di logica parallela per il design di sistemi di controllo logici.

Amministratore

Classe '76 , diplomato Tecnico Industrie Elettriche ed Elettroniche scopre il Calcolo Distribuito quasi per caso
nel web cercando "compilazione distribuita su macchine GNU/Linux" (correva l'anno 2008-2009).

Si registra a Boinc@Italy nel 2010 ma comincia a frequentarne il forum solo nel 2012.

Progetti preferiti quelli medico-scientifici , in particolare GPUGrid.

Utilizzatore del Sistema Operativo GNU-Linux ,e' il  manutentore improvvisato del server di BOINC.Italy.

Il team di Rosetta augura a tutti un buon anno e pubblica un breve riassunto degli ottimi risultati raggiunti dal team durante il recente CASP11. Ringraziano, inoltre, tutti i volontari per il contributo dato!

Valutazione attuale: 5 / 5

Gentili amici,

già lo scorso anno ho solleticato le vostre papille gustative con un veloce excursus riguardante le più disparate forme di alimentazione alternativa presenti in questo nostro disparato mondo. Durante le ricerche preparatorie per l’articolo mi ero imbattuto nell’altisonante nome di “Specie Umana: Progetto 3M”, ma lo avevo messo velocemente in una cartella per l’eventuale bibliografia (lo aveva già citato di sfuggita anche il buon Danieleg nel vecchio thread). Grave errore il mio!!!! Il “Progetto 3M” è veramente un luminoso esempio di come sia possibile costruire uno stile di vita basandosi sul nulla.

La forma

Il progetto consiste in un libro on-line, un pdf di 1773 pagine (che il sottoscritto, con gravi rischi per la sua salute mentale, si è sciroppato integralmente) impaginate da un tossicodipendente in crisi di astinenza (font delle più diverse fogge e fatture, testo non giustificato, paragrafi ed interlinee che cambiano ogni 3 righe, ecc, ecc) , tant’è che se fossero correttamente revisionate occuperebbero non più di 150 pagine.

Gli autori del libro, vista la sua vitale importanza per il genere umano, ovviamente sono anonimi e nessun riferimento è presente sul sito da cui è possibile scaricarlo gratuitamente, tranne l’indicazione tipica: fate girare il più possibile.

All’interno del pdf, poi, è fin da subito ben chiara la levatura scientifica del tutto, quando gli autori sottolineano che:

“Questo libro, ormai ampiamente diffuso in tutto il mondo da anni, è stato scritto col metodo intertestuale moderno, cioè con la formattazione derivata dall'interazione tra molte centinaia di scienziati specialisti nelle singole discipline scientifiche provenienti da tutto il pianeta (diverse decine di essi, a seconda dell'argomento, per ogni capitolo, paragrafo o singolo settore di quest'ultimo) che hanno unito i risultati delle ricerche scientifiche più avanzate in assoluto……tali ricerche scientifiche, dalla fisica particellare, alla fisica nucleare, meccanica quantistica, astrofisica, biofisica, biochimica, biologia molecolare, paleoantropologia moderna, anatomia comparata, fisiologia comparata, morfologia funzionale comparata fitozoologica(???), scienza dell'alimentazione moderna, medicina moderna, patologia moderna, terapeutica moderna, ecosistemica moderna, urbanistica comparata moderna, scienza economica e finanziaria applicata moderna, scienza politica applicata moderna, sociologia applicata moderna, scienza della conversione industriale, scienza moderna dei sistemi di produzione alimentare mondiale, scienza delle costruzioni moderna, scienza della eco-produzione energetica mondiale, ecc.”

Beh, ovvio che uno, dopo un incipit del genere, abbia delle aspettative abbastanza alte! Poi, però, l'odore di supercazzola da quattro soldi elevatissima scienza comincia a farsi abbastanza forte:

“I PIU' GRANDI SCIENZIATI AL MONDO in ogni campo hanno accettato di APRIRE LETTERALMENTE i propri armadietti professionali più preziosi, contenenti LE PIU' GRANDI SCOPERTE SCIENTIFICHE DI TUTTI I TEMPI in ogni settore TENUTE SEGRETE PER DECENNI, e talvolta tramandate addirittura per qualche secolo, senza che la popolazione purtroppo avesse la minima idea che esistessero”.

Ma caspita, ma io queste centinaia di scienziati voglio conoscerli, voglio stringer loro la mano per ringraziarli personalmente uno a uno….ed invece no:

“le MOLTE CENTINAIA di SCIENZIATI predetti che hanno unito i risultati sperimentali ultradecennali iniziali non ancora ufficializzati e poi incrociati con quelli dei colleghi delle altre discipline scientifiche, hanno ritenuto opportuno PREFERIRE L'ANONIMATO”.

Per fortuna, però, ci hanno lasciato il nome di questa nuova disciplina che dovrebbe rivoluzionare la vita umana, ovvero la “Oloscienza”,

"i cui parametri di base sono quelli postdetti, e la cui struttura di base è proprio esattamente quella del PRESENTE TESTO, che rispecchia la massimamente POTENTE PROCEDURA FONDAMENTALE per affrontare e RISOLVERE qualsiasi problema relativo alla specie umana, di portata anche MONDIALE."

Oh, mammina, questi possono risolvere QUALSIASI problema mondiale, avete capito? E come possiamo fare per aiutarli, ma ovviamente imparando tutti l’Oloscienza, ignoranti che non siamo altro:

“UNIVERSITA' OLOSCIENTIFICA, comprendente SOLO ed ESCLUSIVAMENTE la suddetta OLOSCIENZA, e che, come tutte le strutture PIU' PROGREDITE IN ASSOLUTO, deve avere una impostazione SEMPLICE ed EFFICACE”.

Il contenuto

Dopo aver compreso a fondo “il come” possano questi centinaia di scienziati (e anche noi iscritti alla facoltà di Oloscienza) migliorare le sorti del mondo, dobbiamo capire “il cosa”, ovvero il contenuto profondo di queste 1700 pagine. L’autore entra subito nel merito della questione enunciando un teorema fondamentale dell’Oloscienza:

“OGNI SINGOLO ATOMO DI TUTTO IL NOSTRO ORGANISMO PROVIENE SOLO ED ESCLUSIVAMENTE DAL CIBO”.

Quindi, di che cibo dovremmo essere fatti? “la SPECIE UMANA non è "onnivora", non è carnivora, non è granivora, non è erbivora, non è frugivora (da "fruges"= frutta e parti tenere di vegetali), ma è fruttivora ed in particolare è assolutamente MALIVORA [da "malum"(a sua volta da "malon"= il frutto)= mela].”

Ma scusate, sono arrivato a pagina 50 del Vostro testo e mi dite di mangiare una mela (e che siete dei semplici Melariani)? Ma me lo diceva anche mio nonno quando ero bambino. E le restanti 1723 pagine adesso come le riempite??

Andiamo, però, con ordine altrimenti non si capisce come si sia arrivati alla mela. Motivo per cui la prima domanda che ci facciamo è “Come è nata l’umanità”?

“La specie umana, cioè, non solo nacque perfettamente MALIVORA si nutriva, quindi, solo ed esclusivamente di mele (per l'esattezza di variazione cromatica rossa), ma addirittura nacque solo ed escusivamente grazie alla struttura anatomica stessa del melo, che da struttura arborea a basso fusto ha costretto la nostra struttura primatica arboricola a locomozione sospensoria ad adattarsi gradualmente alla locomozione bipede terrestre”.

Ah, praticamente l’uomo è diventato eretto per raccogliere le mele, interessante teoria che si completa con i dati seguenti:

“A quel punto, è ormai scientificamente chiarissimo che l'uomo continuò a vivere in quella sorta di paradiso terrestre per ben 5,2 milioni di anni, in cui i pochi reperti fossili indicano anche una assenza totale di malattie e una vita media come minimo molto superiore ai massimi standard attuali, addirittura sembra con limite vitale indefinito”.

Cioè, mangiando solo mele (solo rosse, tra l’altro) erano diventati immortali? Fantastico!! Corro subito dal mio fruttivendolo sotto casa!

Ma perché la mela e non, per esempio, l’arancia? Ovvio, perché

“La MORFOFUNZIONALITA' TROFICA SPECIE-SPECIFICA della SPECIE UMANA è anch'essa MOLTO CHIARA e indica precisissimamente anche la PROVENIENZA SPAZIALE NATURALE dell'UNICO cibo ANATOMO-FISIOLOGICAMENTE ADATTO alla sua specie”, ovvero, “nei MILIONI di anni di CO-EVOLUZIONE, acquisisce una STRUTTURA MORFOFUNZIONALE (e biochimico-fisiologica) PERFETTAMENTE COMPLEMENTARE proprio alla STRUTTURA MORFOFUNZIONALE (e biochimico-fisiologica) del FRUTTO stesso”.

In pratica, dal momento che la forma della mano sembra essere "fatta apposta" per contenere una mela, allora la mano si è “evoluta” per raccogliere le mele. Praticamente ci sarebbero da riscrivere tutti i libri di paleontologia finora stesi, dal momento che le mele sono state alla base sia dell’ergersi dell’uomo in posizione verticale sia del pollice oppositivo!!

E gli altri cibi? Quelli che fin dalla preistoria accompagnano il cammino dell’uomo? Ecco, dimenticateveli:

“Dunque, quando riferendosi alla specie umana, si parla di altra frutta, della cosiddetta "verdura", dei cosiddetti "semi", del latte aspecifico, dei cosiddetti "formaggi", delle uova, del cosiddetto "pesce", della cosiddetta "carne", ecc. non si sta ovviamente parlando di qualcosa che ha minimamente a che fare col concetto di "cibo", in quanto, ovviamente, sono solo ed esclusivamente componenti ecosistemiche trofo-aspecifiche, e quindi, come vedremo meglio nel capitolo relativo alla patologia moderna, se introdotti dentro il nostro organismo costituiscono semplicemente un insieme di tossine trofo-aspecifiche (cioè di componente ecosistemica trofo-aspecifica), innescando immediatamente il processo patologico”.

Secondo voi, centinaia di scienziati Progettisti 3M, basterebbe quindi una dieta vegana per poter vivere meglio? Giammai, dal momento che

“è esattamente per questo motivo che chi si "nutre" ancora anche di cadaveri animali, o ancora anche di cadaveri vegetali (come gli umani ancora "onnivori", vegetariani, vegan, vegan-crudisti, ecc.), ha una defecazione ancora estremamente o decisamente puzzolente, cosa che avviene in maniera quasi nulla nei fruttariani, e assolutamente del tutto nulla, anzi con un odore addirittura piacevole (come specialmente per le urine) nei melariani di tutto il mondo.

Ecco, io adesso, amici melariani, non vorrei spaventarvi, ma il cambio di odore dell’urina spesso (ma non sempre, si pensi agli asparagi) è legato ad un cambiamento del PH della stessa e questo, ve lo devo dire, non è una cosa bellissima dal punto di vista medico, eh.

E comunque io due mele cotte con lo zucchero me le farei proprio….giammai: "IN NATURA NON ESISTE ASSOLUTAMENTE IL CIBO COTTO, infatti, SIAMO L'UNICO ANIMALE CHE CUOCE I CIBI”.

Vero! Dobbiamo anche considerare, però, che siamo l'unico animale in grado di scrivere programmi in linguaggio Java.

Vogliamo poi parlare della mela di Adamo ed Eva o dell'Olimpico Pomo della Discordia? E Guglielmo Tell dove lo mettete? E "Il Tempo delle Mele"?? Ecco, io direi di fermarmi qui (anche perché riassumere 1700 pagine di cazzate, Oloscienza non è facile) dal momento che vi ho dimostrato chiaramente come è possibile cambiare in meglio l’umanità mangiando le mele.

Mangiate mele rosse crude e solo quelle, mi raccomando!!

Valutazione attuale: 2 / 5

Gentili amici scaccolatori,

credevo che questo momento non sarebbe mai arrivato ed invece eccoci qui. Abbiamo infatti deciso, di comune accordo con chi sta eseguendo la migrazione, di aprire la fase di test pubblico del nuovo sito. In questo post vi dirò come accedervi e vi chiedo, in cambio, di segnalare le eventuali problematiche che incontrerete nella fruizione dello stesso. Dovete, ovviamente, considerare alcune cose:

1) Il sito è "freezzato" ad alcuni mesi fa, quindi non stupitevi se i post nel forum, ad esempio, sono vecchi.

2) Se farete delle modifiche (tipo un nuovo post sul forum), queste andranno perse nella migrazione finale.

Per accedere al nuovo sito

Come prima cosa dovrete editare il vostro file hosts (per gli utenti windows esso è presente in C:\windows\system32\drivers\etc\, per gli utenti linux è in /etc/, mentre per gli utenti Mac non ne avrei idea....) con la seguente riga

95.141.32.165   www.boincitaly.org

Salvate il file e aprite il browser (provateli pure tutti)

L'indirizzo del nuovo sito è

www.boincitaly.org/25/

N.B. Ovviamente dopo la modifica del file hosts non riuscirete più ad accedere al sito in produzione. Per farlo dovrete ri-editare il file hosts (magari inserendo una # all'inizio della riga di cui sopra, così da disabilitarla).

Sul sito di test funzioneranno correttamente le vostre credenziali di login

Cosa fare

Provate un pò di tutto, magari quello che fate tutti i giorni. Girate le varie sezioni del sito, create post, thread, ecc.

Dopo di che, venite in questo thread e segnalate cosa avete trovato che non va. Io provvederò ad inserirlo nella lista sottostante e a cominciare a lavorarci sopra. Quando saranno risolte, verrà tirata una riga sopra.

Comincio io stesso a popolare la lista:

Buon lavoro a tutti.

Collaboratore e gestore FAQ (dormiente)

Valutazione attuale: 5 / 5

Gestore canale IRC

Referente (dormiente)

Moderatore

Nato a Imola nel 1969, appassionato di informatica (primo PC un ZX Spectrum 48K) e Basket NBA, nel 2007 scopre il calcolo distribuito e un anno dopo si unisce al team e al forum, cominciando a spammare inutilmente, ma anche facendo il referente per il progetto MalariaControl.
Per BI, oltre a essere uno dei MOD del Forum, gestisce anche la pagina su Facebook, facendo sostanzialmente da eco alle iniziative del portale o linkando importanti notizie dai vari progetti o che riguardino la scienza e la tecnologia in generale. Ha conseguito a pieni voti un Master in Amministratore dei sistemi informatici RIS-PACS.

Moderatore

Bellunese, classe 1987, ho conosciuto il calcolo distribuito nel 2009, durante una mia ricerca su internet di materiale riguardante Einstein (mai più finita), e dal 2013 ho fatto l'autodidatta nella comprensione di questo argomento, avvicinandomi alla Community Boinc Italy ed alle sue iniziative, con un maggiore interesse rispetto a prima.

Amministratore (dormiente)

Padovano, classe '83, ha conseguito la laurea magistrale in Economia Internazionale (Economia d'Impresa) presso la facoltà di Scienze Politiche.

Ha conosciuto BOINC tramite Hardware Upgrade nel 2005, nel 2007 è entrato con entusiasmo a far parte di BOINC.Italy aiutando lo staff originario e diventando successivamente amministratore.

Dopo un periodo di lavoro in estremo oriente ora vive felicemente nelle Perfida Albione e da lì, con sguardo benevolo, controlla tutti i nostri movimenti.

Amministratore (dormiente)

Friulano, classe '69, laureato in ingegneria industriale, programmatore. La passione per i PC e l'elettronica lo porta ad occuparsi di automazione industriale, cosa di cui attualmente campa, gironzolando per l'Italia e per il mondo.

Ha conosciuto BOINC passando per Folding@home ed ora ha una vera e propria farm con tanto di server multiprocessore e impianto fotovoltaico da 6kW. Ha contribuito alla crescita della community attraverso le sue numerose attività portate avanti in questi anni, tra cui la documentazione e gli articoli relativi ai progetti di ricerca, la stesura di guide e pagine di approfondimento, ed alle iniziative realizzate quali la newsletter, le immagini con le statistiche personalizzate, la sfida CASP.ITA, e molte altre.

Le ultime voci di corridoio lo davano sperso per alcune lande oltralpe.......attendiamo sue notizie!!

Amministratore

Veronese, classe 1975, informatico e appassionato di calcolo distribuito (nonostante la laurea in filosofia), contribuisce alla community con  la traduzione e la ricerca di documentazione sui progetti. E' presente nel forum di discussione dove comunica le novità dei vari progetti, in particolare di quelli biomedici, e gestisce il Glossario del portale e la sezione della Pubblicazioni Scientifiche.

Risulta essere, inoltre, l'epistemologo ufficiale del gruppo, sempre attivo alla ricerca e confutazione di pseudoscienze e appassionato di debunking.

Amministratore e programmatore

Nato il 22 maggio del 1986 a Mirandola, nel modenese, attualmente vive vicino a Carpi, sempre nella provincia di Modena. E' laureato in Ingegneria delle Telecomunicazioni presso l’Università di Modena. Ha conosciuto BOINC tramite Hardware Upgrade nel 2003, e nel 2007 ha seguito il team nel cambio di nome in BOINC.Italy. Si è inserito progressivamente nello staff, aiutandolo tra l’altro nella creazione di alcune funzioni delle statistiche interne, fino ad assumere l’attuale carica di amministratore.

Nonostante un carattere non particolarmente piacevole, è riuscito a farsi benvolere da tutta la comunità, che lo tratta un po' come una pezza da piedi che deve sistemare tutte le rogne.

Fondatore ed amministratore

Nato a Pisa nel 1984, appassionato di tecnologia ed informatica, nel 2002 scopre il calcolo distribuito nel forum di Hardware Upgrade, ai tempi del Seti Classico. Dal 2003 guida il team, portandolo, grazie alla sua passione ed alle sue idee, da piccolo team nel forum di Hardware Upgrade a grande community con portale dedicato.

Gestisce i vari aspetti della community, soprattutto dal lato tecnico ed organizzativo.

Attualmente impegnato come sviluppatore e system administrator nel reparto IT di un istituto di credito toscano, ha realizzato il portale BOINC.Italy e le sue svariate funzioni per gli utenti BOINC che gestisce con l'aiuto dei vari collaboratori.

Sempre attivo nella realizzazione delle sue idee ed iniziative della community, è alla costante ricerca di soluzioni per far crescere BONC.Italy e diffondere il calcolo distribuito in italia. (ecco, magari questa frase prendetela con beneficio di inventario)

DNA@HOME, dettagli scientifici del progetto

IMMAGINE 1

Il termine "epigenetica" significa "sopra il gene”, e si riferisce a cambiamenti nell'espressione genica che sono indipendenti dalla sequenza del DNA. Ciò significa che il nostro modo di interagire con il nostro ambiente, il cibo che mangiamo, le sostanze chimiche a cui siamo esposti, ecc possono tutti avere la capacità di cambiare quali geni sono “accesi” e che sono “spenti”, senza mutare il DNA. Questi cambiamenti, indicati collettivamente come "epigenomica", possono influenzare non solo i nostri geni, ma possono essere stabilmente ereditati e influenzare i nostri figli di geni e anche dei nostri nipoti!

La regolazione epigenetica dell'espressione genica si realizza attraverso le azioni di metilazione del DNA, del codice istoni, e con RNA non-codificanti (ad esempio, miRNA), che possono funzionare indipendentemente o in concerto. Il contributo preciso di ogni fattore può variare a seconda del particolare gene di interesse e del suo contesto, per esempio, specie, tipo di cellula, stadio di sviluppo, e l'età dell'organismo. Anche se non tutte le modifiche epigenomiche dovrebbero essere problematiche, alcune potrebbero avere conseguenze negative (ad esempio, uno sviluppo anormale, un aumento della suscettibilità alle malattie).

Con il progetto DNA@Home, studiamo il modo in cui le proteine note come “fattori di trascrizione” si legano per individuare e selezionare le regioni del nostro genoma. Il nostro focus è su due fattori molto interessanti chiamati “Snail” e “Slug” (non legate agli animali del giardino), che hanno dimostrato di giocare un ruolo critico nella malattia. Le espressioni di “Snail” e “Slug” provocano la perdita di proteine di adesione cellulare, rendendo le cellule meno "appiccicose" e più "mobili", causando le metastasi. Così, come si può immaginare, la comprensione di come queste proteine sappiano a quali specifiche sequenze di DNA legarsi, è cruciale nello sviluppo di bersagli terapeutici per le malattie come il cancro.

La famiglia di proteine “Snail” ha dimostrato di svolgere un ruolo importante sia nello sviluppo fisico che nella malattia. Le due proteine “Snail” e “Slug” sono molto simili, come si è visto in questa immagine (2).

IMMAGINE 2

Proteine “Snail” e “Slug” (NDT: “Lumaca” e “Chiocciola”)

La regione repressiva nella prima metà delle proteine è simili all’89%, mentre le regioni di estremità (regioni che legano il DNA) sono 84% identiche. Vi sono anche alcune differenze, soprattutto nel mezzo delle proteine.

IMMAGINE 3

Slug ed EMT (Transizione Epitelio-Mesenchimale):

Questa immagine (3) mostra quello che accade alla proteina E-caderina (tinta in rosso) prima e dopo l'espressione “Snail”. Le cellule sono generalmente in uno stato "epiteliale", il che significa che le cellule sono attaccate insieme. Si può vedere un modello ben definito di E-caderina, che mostra un modello “acciottolato” (cobblestone) o “a maglie” (rosse). Dopo induzione Snail, l’espressione E-caderina si perde, così le cellule perdono la loro "viscosità", e iniziano a muoversi. Il nucleo di ogni cellula è macchiato in blu.

Grazie alla potenza di calcolo messa a disposizione cercheremo di capire il funzionamento di queste due proteine e di come porre rimedio ad eventuali malfunzionamenti.

Gli amministratori hanno rilasciato, dopo molti mesi di sviluppo e debug, una nuova versione stabile del client Boinc, la 7.4.27.

Qui le note di rilascio, con novità che vanno dal supporto OpenCL 1.2 per le cpu alla possibilità delle notifiche con immagini e video.

La nuova versione che sta per arrivare (la 7.4) non supporterà più versioni di CUDA precedenti alla 6.5, quindi tutte le schede video non in grado di supportare questa versione non saranno più utilizzabili con Boinc. La CC (Computer Capability) richiesta, quindi, sarà almeno la 1.3. Qui la lista delle GPU con le relative caratteristiche gpgpu.

Gli amministratori del progetto CSG hanno rilasciato un nuovo batch per il progetto DNA@Home, e le wu inizieranno con il nome "test_hg19_10fa_1". Questo batch dovrebbe essere più corto dei precedenti, ma vogliono testare se funzionano i checkpoint personalizzati che hanno inserito nel codice (cos' che non ci siano checkpoint ogni secondo). Se funzionerà, partiranno batch molto più corposi.

Valutazione attuale: 5 / 5

Il canale IRC di Boinc Italy

Per collegarsi al canale IRC di Boinc Italy accedi da qui .

I ricercatori dell'Accademia Russa per le Scienze hanno rilasciato CluBORun (Cluster for Boinc Run), un tools per far girare Boinc su un cluster. Un articolo che descrive il funzionamento è disponibile qui

Valutazione attuale: 5 / 5

Un recente articolo nella rivista Future Generation Computer Systems, descrive come Boinc può essere usato come applicativo cloud o come estensione del Servizio Grid Europeo basato su gLite.

Ieri sera il team di Citizen Science Grid ha rilasciato una nuova versione dell'applicativo per DNA@Home, con un batch già attivo. Questa versione comincerà finalmente l'analisi del genoma umano e gli scienziati sono molto curiosi di vedere quali saranno i risultati.

Come alcuni di voi sapranno, i progetti DNA@Home, SubsetSum@home e WildLife@home sono stati riuniti sotto l'unico progetto multidisciplinare "Citizen Science Grid". Abbiamo provveduto a riunire i rispettivi thread di discussione all'interno di un nuovo thread nella sezione "Progetti Multidisciplinari". Per ora i thread sono semplicemente giustapposti, ma pensiamo in futuro di creare un unico thread sul modello WCG.

David Baker, il responsabile del progetto Rosetta, ha pubblicato una lettera in cui ringrazia i partecipanti del progetto e aggiorna sullo stato del progetto, compresi i fondi che varie agenzie governative hanno assegnato al team di ricerca.
Qui maggiori dettagli.

Il Progetto TN Grid ci informa che al momento non ci sono workunits, ma che il  lavoro fatto finora con le wu terminate e opportunamente visionate ha portato ad alcune conclusioni, visibili a breve sulla sezione "Pubblicazioni". Invitiamo tutti coloro che hanno contribuito a dare un'occhiata al lavoro di Mr Valterc e degli studenti che, tramite il suo corso, hanno avuto l'opportunità e la fortuna di creare un progetto, di mandare e ricevere elaborazioni, e di fare pure una pubblicazione (oltre alla partecipazione a convegni ed eventi sul tema). 

Qui potete leggere la news, dal loro sito http://gene.disi.unitn.it/test/

I server Boinc (forum, download dell'applicativo, ecc) saranno spenti il 17 cm per la manutenzione dell'impianto.

Gli amministratori del progetto sono lieti di annunciare il client Ralph per dispositivi android-9 sia tablet che smarthphone. Sarà sufficiente installare il client boinc e aggangiare il progetto.

Gli admin del progetto annunciano che stanno per lasciar finire le attuali galassie - inoltre la prossima settimana eseguiranno un aggiornamento del software BOINC.
Quindi, una volta che la coda sarà vuota non saranno disponibili altre WU per una settimana.

Valutazione attuale: 5 / 5

Queste informazioni sono liberamente tratte da http://it.wikipedia.org/wiki/Margherita_Hack

Firenze, 12 giugno 1922 – Trieste, 29 giugno 2013

Astrofisica e divulgatrice scientifica.

Margherita Hack, dopo aver compiuto gli studi (senza sostenere gli esami di maturità a causa dello scoppio della seconda guerra mondiale) presso il Liceo Classico "Galileo" di Firenze, si laureò in fisica nel 1945 con una tesi di astrofisica sulle Cefeidi,

In gioventù la Hack, oltre alla pallacanestro, praticò con successo l'atletica leggera. Fu campionessa di salto in alto e in lungo in campionati universitari.

Attività scientifica

È stata professore ordinario di astronomia all'Università di Trieste dal 1964 al 1º novembre 1992. È stata la prima donna italiana a dirigere l'Osservatorio Astronomico di Trieste dal 1964 al 1987, portandolo a rinomanza internazionale.

Membro delle più prestigiose società fisiche e astronomiche, Margherita Hack è stata anche direttrice del Dipartimento di Astronomia dell'Università di Trieste dal 1985 al 1991 e dal 1994 al 1997.
È stata un membro dell'Accademia Nazionale dei Lincei.
Ha lavorato presso numerosi osservatori americani ed europei ed è stata per lungo tempo membro dei gruppi di lavoro dell'ESA e della NASA.
In Italia, con un'intensa opera di promozione ha ottenuto che la comunità astronomica italiana espandesse la sua attività nell'utilizzo di vari satelliti giungendo ad un livello di rinomanza internazionale.

Ha pubblicato numerosi lavori originali su riviste internazionali e numerosi libri sia divulgativi sia a livello universitario. Nel 1994 ha ricevuto la Targa Giuseppe Piazzi per la ricerca scientifica. Nel 1995 ha ricevuto il Premio Internazionale Cortina Ulisse per la divulgazione scientifica.

Margherita Hack nel 1978 fondò la rivista bimensile L'Astronomia il cui primo numero vide la luce nel novembre del 1979; successivamente, insieme con Corrado Lamberti, diresse la rivista di divulgazione scientifica e di cultura astronomica Le Stelle.

Attività sociale e politica

Margherita Hack era molto nota anche per le sue attività non strettamente scientifiche e in campo sociale e politico.

Era atea, non credeva in nessuna religione o forma di soprannaturalismo, avversa a ogni forma di superstizione, comprese le pseudoscienze, dal 2002, presidente onoraria dell'Unione degli Atei e degli Agnostici Razionalisti e dal 2005 si iscrisse all'Associazione Luca Coscioni per la libertà di ricerca scientifica. È stata iscritta al Partito Radicale Transnazionale.

In più occasioni si è candidata a elezioni (politiche e regionali), ma, pur eletta, preferì cedere il seggio per continuare i suoi studi.

Numerose e significative le sue prese di posizione sui vari temi
- sul nucleare: contro la costruzione di centrali nucleari in Italia, ma a favore della ricerca sul nucleare

- sui diritti civili: a favore dei diritti civili e del riconoscimento giuridico delle coppie omosessuali, per i quali nel 2010 è stata premiata come "Personaggio gay dell'anno"

- sull'eutanasia: come un diritto, un modo per sollevare dalla pena un uomo che soffre.

- sui diritti degli animali: è stata una animalista convinta ed una vegetariana sin da bambina.

Onorificenze e riconoscimenti

Sono state tante le onorificenze e i riconoscimenti, tra i tanti vogliamo ricordare:
— 4 febbraio 2011 l'asteroide 1995 PC, scoperto da Andrea Boattini e Luciano Tesi, è stato denominato "8558 Hack" dall'Unione Astronomica Internazionale.

Gli amministratori hanno reso disponibile la nuova versione dell'applicativo (la 3.52), che contiene un paio di bugfix relativi alla modellazione simmetrica. In caso di problemi siete pregati di postarli sul forum del progetto.

Gli admin del progetto comunicano che Dan Werthimer è andato alla Camera dei Rappresentanti degli Stati Uniti per presentare lo stato attuale della ricerca SETI. Ecco il testo integrale della sua testimonianza. Il video è disponibile a questo link.

Il decimo workshop internazionale su Boinc si terrà dal 29/09 al 02/10 di quest'anno presso la sede del SZTAKI Institute a Budapest. Sarà ampliata la parte dedicata all'hackfest con una giornata aggiuntiva, così da lasciare più spazio alla parte pratica riguardante il codice e i nuovi progetti.

E' stata pubblicata la nuova sezione del nostro sito, dedicata alle pubblicazioni scientifiche riguardanti Boinc e il mondo del calcolo distribuito volontario.

Pubblicazioni

Scienze Cognitive

(Cognitive science)

Mind Modelling

--2016--

Godwin H.J., Walenchok S. et al. - "Faster than the speed of rejection: Object identification processes during visual search for multiple targets". J of Exp Psyc Human Percept Perfom 41(4), 2016. Link

--2014--

Moore L. R., Gunzelmann G. - "An interpolation approach for fitting computationally intensive models". Cognitive Systems Research 19, 2014. Link

--2011--

Moore L.R. - "Cognitive model exploration and optimization: a new challenge for computational science". Computational and Mathematical Organization Theory 17(3), 2011. Link

--2010--

Moore L.R., Kopala M., Mielke T. et al. - "Simultaneous performance exploration and optimized search with volunteer computing". 19th ACM International Symposium on High Perfomance Distribuited Computing, 2010. Link

--2009--

Harris J., Gluck K.A., Moore L.R. - "MindModeling@Home. . . and Anywhere Else You Have Idle Processors". 9th International Conference on Cognitive Modelling, 2009. Link

--2008--

Harris J. - "MindModeling@Home: a large-scale computational cognitive modeling infrastructure". CSER 2008. Link

--2007--

Gluck K., Scheutz M. - "Combinatorics meets processing power: Large-scale computational resources for BRIMS". 16th Conf Behaviour Rappresentation, 2007. Link

Pubblicazioni

Progetti Non Boinc - Citizen Science

(Not-Boinc)

BlackHoles ° CosmoQuest ° Dizeez ° Dimes ° EteRNA ° EyeWired ° Folding ° Fold.It ° Gimps ° HashClash ° Hydrology ° LifeMapper ° Mark2Cure ° Models ° Muon1 ° Phylo ° Rad ° SetiLive ° SeventeenOrBurst ° Stall Catchers (Eyes on ALZ) ° Stardust ° The Cure ° The Dreamlab ° ZooUniverse

BlackHoles

Zachariah E. - "BlackHoles@Home: Numerical Relativity on Consumer-Grade Computers, for the Benefit of Gravitational Wave Astronomy1". APS Meeting 66(5), 2021. Link

Zachariah E. - "The BlackHoles@Home Project: Black Hole Binaries on the Desktop Computer". APS Meeting 2019. Link

CosmoQuest

Moon Mapper

--2020--

Wang Y., Xie M. et al. - "The minimum confidence limit for diameters in crater counts". Icarus 341, 2020. Link

--2019--

Bennet C.A., Gay P. et al. - "OSIRIS-REx and CosmoQuest: Using Citizen Science for Active Mission Operationsand Beyond". EPSC Abstracts Meeting 13, 2019. Link

--2018--

Myers J.L., Gay P. et al. - "Putting the focus on science: Astrometry and Photometry with Transient Tracker". American Geophys Union Meeting, 2018. Link

Bennet C.A., Gay P. et al. - "Hazard Identification Using CosmoQuest Citizen Science for the OSIRIS-REx Mission". Americ Geophys Union Meeting, 2018. Link

Grier J.A., Richardson M. et al. - "Crater Identification and Incidence Angle:  A Preliminary Look Through the Eyes of CosmoQuest’s Citizen Scientists". 49th Conf of Lunar and Planetary Science, 2018. Link

Buxner S., Andrea J. et al. - "International Observe the Moon Night: Eight Years of Engaging Scientists, Educators, and Citizen Enthusiasts in NASA Science". AAS Meeting 231, 2018. Link

--2017--

Grier J.A., Richardson M. et al. - "CosmoQuest - Mapping Surface Features Across the Inner Solar System". Americ Astronom Society DPS Meeting 49, 2017. Link

--2014--

Robbins S.J. - "New crater calibrations for the lunar crater-age chronology". Earth and Planetary Science Letters 403, 2014. Link
    
Robbins S.J, Antonenko I., Kirchoff M.R. et al. - "The variability of crater identification among expert and community crater analysts". Icarus 234(109), 2014. Link

--2013--

Antonenko I., Robbins S.J., Gay P. et al. - "Effects of Incidence Angle on Crater Detection and the Lunar Isochron System: Preliminary Results from the CosmoQuest MoonMappers Citizen Science Project”. 44th Lunar and Planetary Science Conference, 2013. Link

--2012-- 

Robbins S.J, Antonenko I., Lehan C., Moore J. - "CosmoQuest Moon Mappers: Cataloguing the Moon”. National Lunar Sciences Forum, 2012. Link
   
Gay P., Antonenko I., Robbins S. J. et al. - "CosmoQuest MoonMappers: Citizen Lunar Exploration." European Planetary Science Congress 2012. Link


Education

2021 - 2020 - 2019 - 2018 - 2017 - 2016 - 2014 - 2013 - 2012

--2021--

Gay P., Falco L. - "Mob Programming Astronomy". Americ Astro Society Bulletin 53(1), 2021. Link

--2020--

Gay P.L. - "Open Sourcing Citizen Science". Americ Astronom Soc Meeting #235, 2020. Link

--2019--

Durrell P.R., Gay P. et al. - "CosmoQuest: Streaming Science". AAS Meeting 233, 2019. Link

--2018--

Burge-Beckely T., Gay P. et al. - "Analyzing Integrity of Citizen Science Data". American Geophys Union Meeting, 2018. Link

Bakerman M., Gay P. et al. - "CosmoQuest: Getting Twitchy for Science". ASP Confer Series 524, 2018. Link

Nona Bakerman M., Buxner S. et al. - "Assessing Motivations and Use of Online Citizen Science Astronomy Projects". AAS Meeting 231, 2018. Link

Gay P., Buxner S. et al. - "CosmoQuest: Making the public your students and collaborators". AAS Meeting 231, 2018. Link

Buxner S., Maya B. et al. - "CosmoQuest: Measuring Audience Needs to Obtain Better Science". AAS Meeting 231, 2018. Link

Myers J.L., Lehan C. et al. - "CosmoQuest Transient Tracker: Opensource Photometry & Astrometry software". AAS Meeting 231, 2018. Link

Richardson M., Grier J. et al. - "CosmoQuest: A Glance at Citizen Science Building". AAS Meeting 231, 2018. Link

--2017--

Buxner S., Gay P. et al. - "Leveraging CosmoQuest: Quantitative Analysis of Audience Interests and Behaviors". Americ Geophys Union Meeting, 2017. Link

--2016--

Cobb W., Bracey G. et al. - "CosmoQuest Collaborative: Galvanizing a Dynamic Professional Learning Network". Americ Astro Society DPS meeting 48, 2016. Link

--2014--

Gugliucci N., Gay P., Bracey G., CosmoQuest Team - "Evaluating Motivations of Citizen Science and Impacts of Guerilla Outreach". Meeting of the Astronomical Society of the Pacific, 2014. Link

Gugliucci N., Bracey G., Costello K. et al. - "Designing Lessons for NGSS Using Citizen Science". Meeting of the Astronomical Society of the Pacific, 2014. Link

Bracey, G. "Evaluation of a Virtual Citizen Science Facility: A Comprehensive Mixed-Methods Approach". Astronomical Society of the Pacific Conference Series, 2014. Link

Gugliucci N. , Gay, P. , Bracey, G. , Antonenko, I. et al. - "Citizen Science with CosmoQuest: Science and Strategies". Astronomical Society of the Pacific Conference Series, 2014. Link

Gugliucci N. , Gay, P. , Bracey, G. - "Citizen Science Motivations as Discovered with CosmoQuest". Astronomical Society of the Pacific Conference Series, 2014. Link

Gay P., Lehan C. , Moore, J. et al. - "CosmoQuest: A Cyber-Infrastructure for Crowdsourcing Planetary Surface Mapping and More". 45th Lunar and Planetary Science Conference, 2014. Link

Gugliucci N., Gay P., Antonenko I. et al. - "CosmoQuest Collaboration. CosmoQuest Year 2: Citizen Science Progress, Motivations, and Education". Poster at the American Astronomical Society, AAS Meeting #223, 2014 (ADS abstract). Link

Gay P., Bracey G., Gugliucci N. - "TerraLuna: A CosmoQuest Adventure in Geology". 40th COSPAR Scientific Assembly, 2014. Link

Gay P. - "Designing a Virtual Research Facility to motivate Professional-Citizen Collaboration". 40th COSPAR Scientific Assembly, 2014. Link

Gay, P. - "Taking Science On-air with Google+". Communicating Astronomy with the Public Journal 14, 2014. Link

--2013--

Gay, P. - "Collaborative Cyberinfrastructure: Crowdsourcing of Knowledge and Discoveries." Invited Talk at American Geophysical Union, 2013. Link

Gibbs M.G., Buxner S., Gay P., Crown D.A. et al. - "Collaboration in teacher workshops and citizen science." American Geophysical Union, 2013. Link

Gugliucci N., Gay P., Bracey G., CosmoQuest Team - "CosmoQuest Year 1.5: Citizen Scientist Behaviors and Site Usage Across Multiple Projects." Poster at the American Astronomical Society, AAS Meeting #222, 2013. Link

Gay P., Gugliucci N., Bracey G. et al. - "The CosmoQuest Virtual Research Facility for the Public." 44th Lunar and Planetary Science Conference, 2013. Link

Gugliucci N., Gay P., Bracey G., et al. - "Study of Citizen Scientist Motivations and Effectiveness of Social Media Campaigns". Poster at the American Astronomical Society, AAS Meeting #221, 2013. Link

--2012--

Gay P., Lehan C., Bracey G., Gugliucci N. - "CosmoQuest: A Virtual Facility for Learning and Doing Science". European Planetary Science Congress 2012. Link

Lewis S., Gugliucci N., Amateur Astronomer Team et al. - "CosmoQuest: Virtual Star Parties as a Conduit to Citizen Science Research". American Astronomical Society Meeting #221, 2013. Link

Gugliucci N., Gay P., Bracey G. et al.- "Citizen Science and Planetary Science Education through CosmoQuest." American Geophysical Union, 2012. Link


Vesta

Wise J., Schmidt B.E., Cobb W.H. et al. - "The Dawn Mission’s Use of Google + Hangout for Professional Development and Product Assessment." 44th Lunar and Planetary Science Conference, 2013. Link

Scully J.E.C., Schmidt B.E., Gay P. et al. - "The Dawn Mission and Asteroid Mappers: Vesta Edition: The Impact of Crowd-Sourced Crater Counting". 44th Lunar and Planetary Science Conference, 2013. Link

SU/UP

Dizeez (closed)

Loquercio S., Good B.M., Al S. - "Dizeez: an online game for human gene-disease annotation". PloS One 8(8), 2013. Link

SU/UP

DIMES Project

2015-2013 - 2012 - 2011 - 2009 - 2008 - 2007 - 2005 - 2004

--2015--

Kirkpatrick S. - "Jellyfish and other interesting creatures of the internet". Workshop on Struc and Funct of Complex Network, 2015. Link

--2013--

Argon O., Shavitt Y., Weinsberg U. - "Inferring the Periodicity in Large-Scale Internet Measurements". IEEE Infocom Proceeding, 2013. Link

--2012--

Shavitt Y., Zilberman N. - "Arabian Nights: Measuring the Arab Internet During the 2011 Events". IEEE Network 26(6), 2012. Link

Feldman D., Shavitt Y., Zilberman N. - "A structural approach for PoP geo-location". Computer Networks 56(3), 2012. Link

Marcus D., Shavitt Y. - "RAGE – A rapid graphlet enumerator for large networks". Computer Networks 56(2), 2012. Link

--2011--

Shavitt Y., Weinsberg U. - "Quantifying the Importance of Vantage Point Distribution in Internet Topology Mapping". IEEE Journal on Selected Areas in Communications 29(8), 2011. Link

--2009--

Gonen M., Shavitt Y. - "Approximating the Number of Network Motifs". Internet Mathematics 6(3), 2009. Link

Shavitt Y., Weinsberg U. - "Quantifying the Importance of Vantage Points Distribution in Internet Topology Measurements". IEEE INFOCOM, 2009. Link

Weinsberg U., Shavitt Y., Shir E. - "Near-Deterministic Inference of AS Relationships". INFOCOM Workshops, 2009. Link

Allalouf M., Kaplan E., Shavitt Y. - "On the Feasibility of a Large Scale Distributed Testbed for Measuring Quality of Path Characteristics in the Internet". 5th International Conf on Testbeds and Research Infrastr for the Development of Networks & Communities and Workshops, 2009. Link

--2008--

Almog A., Goldberger J., Shavitt Y. - "Unifying Unknown Nodes in the Internet Graph Using Semisupervised Spectral Clustering". International Conference on Data Mining Workshops, 2008. Link

Shavitt Y., Singer Y. - "Trading Potatoes in Distributed Multi-Tier Routing Systems". 3rd International Workshop on Economics of Networked Systems, 2008. Link

Feldman D., Shavitt Y. - "Automatic Large Scale Generation of Internet PoP Level Maps". Global Telecommunications Conference, 2008. Link

Shavitt Y., Tankel T. - "Hyperbolic Embedding of Internet Graph for Distance Estimation and Overlay Construction". IEEE Transactions on Networking, 16(1), 2008. Link

--2007--

Carmi S., Havlin S., Kirkpatrick S., Shavitt Y., Shir E. - "From the Cover: A Model of Internet Topology Using K-Shell Decomposition". National Academy of Sciences 104(27), 2007. Link

Shavitt Y., Singer Y. - "Beyond Centrality - Classifying Topological Significance Using Backup Efficiency and Alternative Paths". New Journal of Physics 9, 2007. Link

--2005--

Shavitt Y., Shir E. - "DIMES: Let the Internet Measure Itself". ACM SIGCOMM Computer Communication Review 35(5), 2005. Link

Buchanan M. - "DISTRIBUTED COMPUTING: Data-Bots Chart the Internet". Science 308(5723), 2005. Link

--2004--

Shavitt Y., Tankel T. - "On the Curvature of the Internet and Its Usage for Overlay Construction and Distance Estimation". 23th Conference IEEE Computer and Communications Societies, 2004. Link

Shavitt Y., Sun X., Wool A., Yener B. - "Computing the Unmeasured: An Algebraic Approach to Internet Mapping". IEEE Journal on Selected Areas in Communications 22(1), 2004. Link

Raz D., Shavitt Y., Zhang L. - "Distributed Council Election". IEEE Transactions on Networking 12(3), 2004. Link

Shavitt Y., Tankel T. - "Big-Bang Simulation for Embedding Network Distances in Euclidean Space". IEEE Transactions on Networking 12(6), 2004. Link

SU/UP

EteRNA Project

Tangpradabkul T., Palo M. et al. - "Minimization of the E. coli ribosome, aided and optimized by community science". Nucleic Acids Research 52(3), 2024. Link

Andreasson J.O., Gotrik M.R. et al. - "Crowdsourced RNA design discovers diverse, reversible, efficient, self-contained molecular switches". Pnas 119(18), 2022. Link

Wayment-Steele H.K., Kladwang W. et al. - "Deep learning models for predicting RNA degradation via dual crowdsourcing". Nature Machine Intellig 4 (1174-1184), 2022. Link

Wayment-Steele H.K., Das R. - "Learning RNA structure prediction from crowd-designed RNAs". Nature Methods 19 (1181-1182), 2022. Link

Wayment-Steele H.K., Kladwang W. et al. - "RNA secondary structure packages evaluated and improved by high-throughput experiments". Nature Methods 19(1234), 2022. Link

Leppek K., Byeon G.W. et al. - "Combinatorial optimization of mRNA structure, stability, and translation for RNA-based therapeutics". Nature Communic 13(1536), 2022. Link

Wayment-Steele H.K., Kaladwang W. et al. - "RNA secondary structure packages ranked and improved by high-throughput experiments". Nat Methods 19(10), 2022. Link

Wayment-Steele H.K., Do Soon K. et al. - "Theoretical basis for stabilizing messenger RNA through secondary structure design". Nucleic Acids Research 49(19), 2021. Link

Yao H-T., Waldispuhl J. et al. - "Taming Disruptive Base Pairs to Reconcile Positive and Negative Structural Design of RNA". RECOMB 2021. Link

Bonnet E., Rzazewski P. et al. - "Designing RNA Secondary Structures Is Hard". J of Comput Biol 27(3), 2020. Link

Wellington-Oguri R., Fisker E. et al. - "Evidence of an Unusual Poly(A) RNA Signature Detected by High-throughput Chemical Mapping". Biochemistry 59(22), 2020. Link

Yesselman J.D., Eiler D. et al. - "Computational Design of Asymmetric Three-dimensional RNA Structures and Machines". Nature Nanotech 2019. Link

Koodli R., Keep B. et al. - "EternaBrain: Automated RNA design through move sets from an Internet-scale RNA videogame". Plos Comput Biol 15(6), 2019. Link

Portela F. - "An unexpectedly effective Monte Carlo technique for the RNA inverse folding problem". In press. Link

Wellington-Oguri R., Fisker E. et al. - "Evidence of an Unusual Poly(A) RNA Signature Detected by High-throughput Chemical Mapping". In press. Link

Shi J., Das R. et al. - "SentRNA: Improving computational RNA design by incorporating a prior of human design strategies". In press. Link

Wu M.J., Andreasson J.O.L. et al. - "Prospects for recurrent neural network models to learn RNA biophysics from high-throughput data". In press. Link

Yesselman J.D., Eiler D. et al. - "Computational Design of Asymmetric Three-dimensional RNA Structures and Machines". Nature Nanotech, 2019. Link

Portela F. - "Eterna: Towards a More Complete Crowdsourcing of Experimental Sciences". AAAS Annual Meeting 2016. Link

Anderson L., Fisker E., Treuille A. et al. - "Principles for Predicting RNA Secondary Structure Design Difficulty". J of Molec Biol 428(5), 2016. Link

Ochsenreiter R. - "Computational Refinement of SHAPE – RNA probing Experiments". Phd Thesis, 2015. Link

Kosaraju V.S. - "Towards Rational RNA Therapeutics: 3D RNA Engineering in a Massive Open Laboratory". California State Science Fair, 2015. Link

Treuille A., Das R. - "Scientific rigor through videogames". Cell Press 39(11), 2014. Link

Rowles T.A. - "Power to the people: does Eterna signal the arrival of a new wave of crowd-sourced projects?".  BCM Biochem 14(26), 2013. Link

Lee J., Lee M., Kladwang W., Cantu D. et al. - "RNA design rules from a massive open laboratory". National Academy of Science of the USA, 2013. Link

SU/UP

EyeWired

Pospisil D.A., Aragon M.J., EyeWirers et al. - "The fly connectome reveals a path to the effectome". Nature 634, 2024. Link

Bae J.A, Kim J.S., EyeWirers et al. - "Digital museum of retinal ganglion cells with dense anatomy and physiology". Cell 173(5), 2018. Link

Bae J.A, Kim J.S., EyeWirers et al. - "Structural and functional diversity of a dense sample of retinal ganglion cells". Biorxiv, 2017. Link

Green M.J, Seung H.S., EyeWirers et al. - "Analogous Convergence of Sustained and Transient Inputs in Parallel On and Off Pathways for Retinal Motion Computation". Cell Reports 14, 2015. Link

Kim J.S., Green M.J, Seung H.S., EyeWirers et al. - "Space-time wiring specificity supports direction selectivity in the retina". Nature 509(7500), 2014.Link

About Eyewired

Jaskowiec M., Kowalska-Chranowka M. - "The Use of Games in Citizen Science Based on Findings from the EyeWire User Study". Games and Culture 0(0), 2023. Link

Venegas R.S. - "Digital play as an epistemic experience". Play, Philosophy and Performance Book, 2021. Link

Reeves N., West P. et al. - "A game without competition is hardly a game": The impact of competitions on player activity in a human computation game". HCOMP Meeting, 2018. Link

Tinati R., Luczak-Roesch M. et al. - "An investigation of player motivations in Eyewire, a gamified citizen science project". Comput in Human Behavior 73, 2017. Link

Iacovides I., Jennet C. et al. - "Do games attract or sustain engagement in citizen science?: a study of volunteer motivations". Human Factors in Comput Syst, 2013. Link

SU/UP

Folding@Home

About Folding - 2024 - 2023 - 2022 - 2021 - 2020 - 2019 - 2018 - 2017 - 2016 - 2015 - 2014 - 2013 - 2012 - 2011 - 2010 - 2009 - 2008 - 2007 - 2006 - 2005 - 2004 - 2003 - 2002 - 2001 - 2000

About Folding

Gapsys V., Kopec W. et al. - "Biomolecular simulations at the exascale: From drug design to organelles and Beyond". Current Opinion in Struct Biology 88, 2024. Link

Tuma I., Lansiaux E. - "Folding at home: Artificial intelligence and crypto symbiosis for the science". IET Blockchain 4(3), 2024. Link

Kratzke N. - "Volunteer Down: How COVID-19 Created the Largest Idling Supercomputer on Earth". Future Internet 12(6), 2020. Link

Curtis V. - "Patterns of Participation and Motivation in Folding@home: The Contribution of Hardware Enthusiasts and Overclockers". Citizen Science: Theory and Practice 3(1), 2018. Link

Folding

--2024--

Tim M. - "Comprehensive Markov State Models for Assessing and Improving the Accuracy of Protein Folding Simulations". Phd Thesis, 2024. Link

Novak D. - "Molecular Simulation of Mutation Effects on Protein Folding and Function". Phd Thesis, 2024. Link

Bowman G.R. - "AlphaFold and Protein Folding: Not Dead Yet! The Frontier Is Conformational Ensembles". Annual Rev of Biomed Data Science 7, 2024. Link

Vithani N., Todd T.D. et al. - "G Protein Activation Occurs via a Largely Universal Mechanism". J. Phys. Chem. B 128(15), 2024.Link

--2023--

Bowman G.R., Pande V.S. et al. - "Folding@home: Achievements from over 20 years of citizen science herald the exascale era". Biophysical Journal 122(14), 2023. Link

Singh S. - "Parsing mechanisms of cancer drug resistance using distributed supercomputing". Bioph J 123(3), 2023. Link

Novak D., Voelz V. et al. - "Can massively parallel free energy calculations improve in silico affinity maturation of de novo designed miniproteins?". Biophys J 123(3), 2023. Link

Bowman G.R. - "What if all your favorite proteins are druggable". Cancer Resear 83(7_suppl), 2023. Link

Meller A., Ward M. et al. - "Predicting locations of cryptic pockets from single protein structures using the PocketMiner graph neural network". Nat Commun 14 (1177), 2023. Link

Meller A. "Drug specificity and affinity are encoded in the probability of cryptic pocket opening in myosin motor domains". Elife 12(e83602), 2023. Link

Stuchell-Brereton M.D., Miller J.J. et al. - "Apolipoprotein E4 has extensive conformational heterogeneity in lipid-free and lipid-bound forms". PNAS 120(7), 2023. Link

--2022--

Cruz M.A., Frederick T.E. et al. - "Discovery of a cryptic allosteric sitein Ebola s  undruggable  VP35 protein using simulations and experiments". Nat Commun 13 (2269), 2022. Link

Mehregan A., Perez-Conesa S. et al. - "Probing effects of the SARS-CoV-2 E protein on membrane curvature and intracellular calcium". Biochimica et BioPhys Acta (BBA) 1864(10), 2022. Link

Novack D., Qian L. et al. - "Oncogenic Mutations in the DNA-Binding Domain of FOXO1 that Disrupt Folding: Quantitative Insights from Experiments and Molecular Simulations". Biochemistry 61(1669-1682), 2022.
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Jansen J., Reimer K.C. et al. - "SARS-CoV-2 infects the human kidney and drives fibrosis in kidney organoids". Cell Stem Cell 29(2), 2022. Link

Islam M.S., Junod S.L. et al. - "Unprotected peptide macrocyclization and stapling via a fluorine-thiol displacement reaction". Nature Commun 13 (350), 2022. Link

Li Q., Jang B. et al. - "INK4 tumor suppressor proteins mediate resistance to CDK4/6 kinase inhibitors". Cancer Discovery 12 (1-16), 2022. Link

Tang C.P, Clark O. et al. - "GCN2 kinase activation by ATP-competitive kinase inhibitors". Nature Chem Biol 18 (207-215), 2022. Link

--2021--

Starr T.N., Czudonchowski N. et al. - "Antibodies to the SARS-CoV-2 receptor-binding domain that maximize breadth and resistance to viral escape".  Nature 597, 2021. Link

Knoverek C.R., Mallimadugula U.L. et al. - "Opening of a cryptic pocket in ß-lactamase increases penicillinase activity". PNAS 118 (47), 2021. Link

Cubuk J., Alston J.J. et al. - "The SARS-CoV-2 nucleocapsid protein is dynamic, disordered, and phase separates with RNA". Nature Communic 12 (1936), 2021. Link

Qiu Y., Smith D.G.A. et al. - "Development and Benchmarking of Open Force Field v1.0.0-the Parsley Small-Molecule Force Field". J. Chem Theor Comput 17(10), 2021. Link

Morris A, McCorkindale W et al. - "Discovery of SARS-CoV-2 main protease inhibitors using a synthesis-directed de novo design model". Chemic Communication 48, 2021. Link

Jansen J. Reimer K.C. et al. - "SARS-CoV-2 infects the human kidney and drives fibrosis in kidney organoids". Cell Clinic and Translat Report 29(2), 2021. Link

Bahr M.N., Nandkeolyar A. et al. - "Automated high throughput pKa and distribution coefficient measurements of pharmaceutical compounds for the SAMPL8 blind prediction challenge". J of Comput-Aided Molec Desing 35, 2021. Link

Wieder M., Chodera J.D. et al. - "Fitting quantum machine learning potentials to experimental free energy data: predicting tautomer ratios in solution". Chemic Science 34, 2021. Link

Suarez E., Wiewiora R.P. - "What Markov State Models Can and Cannot Do: Correlation versus Path-Based Observables in Protein-Folding Models". J. Chem Theor Comput 17(5), 2021. Link

Isik M., Rustenburg A.S. et al. - "Overview of the SAMPL6 pKa challenge: evaluating small molecule microscopic and macroscopic pKa predictions". J of Comput-Aided Molec Design 35(131-166), 2021. Link

Thomsom E.C., Rosen L.E. et al. - "Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity". Cell 184(5), 2021. Link

Vithani N., Ward M.D. et al. - "SARS-CoV-2 Nsp16 activation mechanism and a cryptic pocket with pan-coronavirus antiviral potential". Biophys J 120(14), 2021. Link

Zimmerman M.I., Porter J.R. et al. - "SARS-CoV-2 Simulations Go Exascale to Capture Spike Opening and Reveal Cryptic Pockets Across the Proteome". Nature Chemistry 13, 2021. Link

Cubuk J., Alston J.J. et al. - "The SARS-CoV-2 nucleocapsid protein is dynamic, disordered, andphase separates with RNA". Nature Communications 12 (1936), 2021. Link

--2020--

Novack D., Qian L. et al. - "FOX01 Transcription Factor Folding Landscape Elucidates the Role of Disease Mutations". Biophys J. 118(3), 2020. Link

Solieva S., Voelz V.A. - "Using Molecular Simulation to Understand the Role of Conserved Residues in an Extremophilic Beta-Galactosidase". Biophys J. 118(3), 2020. Link

Albanese S.K, Chodera J.D. et al. - "Is Structure-Based Drug Design Ready for Selectivity Optimization?". J Chem Inf Model 60(12), 2020. Link

Mey A.J.S., Chodera J.D. et al. - "Best Practices for Alchemical Free Energy Calculations". Living Jour of Comput Molec Science 2(1), 2020. Link

Gkeka P., Stoltz G. et al. - "Machine Learning Force Fields and Coarse-Grained Variables in Molecular Dynamics: Application to Materials and Biological Systems". J. Chem Theor Comput 16(8), 2020. Link

Wan H., Voelz V.A. - "Adaptive Markov State Model estimation using short reseeding trajectories". J Chem Phys 152, 2020. Link

--2019--

Chen S., Wiewiora R.P. et al. - "The dynamic conformational landscape of the protein methyltransferase SETD8". Elife, 2019. Link

Gimenez D., Zhou G. et al. - "Fluorinated Aromatic Monomers as Building Blocks To Control a-Peptoid Conformation and Structure". J of Americ Chem Society 141(8), 2019. Link

Porter J.R., Moeder K.E. et al. - "Cooperative Changes in Solvent Exposure Identify Cryptic Pockets, Switches, and Allosteric Coupling". Biophys Jour 116(5), 2019. Link

Gomes J., Eastman P. et al. - "Classical Quantum Optimization with Neural Network Quantum States". 2nd Workshop on Machine Learn and Phys Sci (NeurIPS), 2019. Link

Zanette C., Bannan C.C. et al. - "Toward Learned Chemical Perception of Force Field Typing Rules". J of Chem Theory Comput 15(1), 2019. Link

Swenson D.W., Prinz J-H. et al. - "OpenPathSampling: A Python Framework for Path Sampling Simulations. 2. Building and Customizing Path Ensembles and Sample Schemes". J of Chem Theory Comput 15(2), 2019. Link

Swenson D.W., Prinz J-H. et al. - "OpenPathSampling: A Python Framework for Path Sampling Simulations. 1. Basics". J of Chem Theory Comput 15(2), 2019. Link

Slochower D.R., Henriksen N.M. et al. - "Binding Thermodynamics of Host-Guest Systems with SMIRNOFF99Frosst 1.0.5 from the Open Force Field Initiative". J of Chem Theory Comput 15(11), 2019.
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Wissler H.L., Ehlerding E.B. et al. - "Site-Specific Immuno-PET Tracer to Image PD-L1". Molec Pharm 16(5), 2019. Link

Hanson S.M., Georghiou G. et al. - "What Makes a Kinase Promiscuous for Inhibitors?". Cell Chem Biol 26(3), 2019.
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Knoverek C.R., Amarisinghe G.K. et al. - "Advanced Methods for Accessing Protein Shape-Shifting Present New Therapeutic Opportunities". Trends in Biochem Sci 44(4), 2019. Link

--2018--

Rizzi A., Murkli S., Chodera J.D. et al. -"Overview of the SAMPL6 host-guest binding affinity prediction challenge". J of Comput-Aided Molecular Design 32(10), 2018. Link

Eastman P., Shi J., Pande V. et al. - "Solving the RNA design problem with reinforcement learning". Plos Comput Biol 14(6), 2018. Link

Modley D.L., Chodera J.D. et al. - "Escaping Atom Types in Force Fields Using Direct Chemical Perception". J Chem Theor Comput 14(11), 2018. Link

Sun X., Singh S. et al. - "Simulation of spontaneous G protein activation reveals a new intermediate driving GDP unbinding". Elife 7, 2018. Link

Ruff E.F., Muretta J.M. et al. - "A dynamic mechanism for allosteric activation of Aurora kinase A by activation loop phosphorylation". ELife 7, 2018. Link

Feinberg E.N., Sur D., Pande V. et al. - "PotentialNet for Molecular Property Prediction". ACS Cent Sci 4(11), 2018. Link

Husic B.E., McKiernan K., Pande V. et al. - "A minimum variance clustering approach produces robust and interpretable coarse-grained models". J Chem Theory Comput 14(2), 2018. Link

Sultan M.M., Pande V. et al. - "Transferable Neural Networks for Enhanced Sampling of Protein Dynamics". J Chem Theory Comp 14(4), 2018. Link

Sinitskiy A.V., Pande V. - "Theoretical restrictions on longest implicit time scales in Markov state models of biomolecular dynamics". J of Chem Phys 148, 2018. Link

Yang H., Staveness D., Pande V. et al. - "REDOR NMR Reveals Multiple Conformers for a Protein Kinase C Ligand in a Membrane Environment". ACS Cent. Sci. 4(1), 2018. Link

Husic B.E., Pande V. - "Markov State Models: From an Art to a Science". J. Am. Chem. Soc. 140(7), 2018. Link

--2017--

Wiewiora R.P., Chen S. et al. - "Conformational Dynamics of Histone Lysine Methyltransferases by Millisecond-Timescale Molecular Dynamics on Folding@home". Biophys Journal Posters 112(3), 2017. Link

Shi J., Nobrega R.P. et al. - "Atomistic structural ensemble refinement reveals non-native structure stabilizes a sub-millisecond folding intermediate of CheY". Sci Rep 7, 2017. Link

Ryckbosch S.M., Wender P.A., Pande V. - "Molecular dynamics simulations reveal ligand-controlled positioning of a peripheral protein complex in membranes". Nature Communic 8(6), 2017. Link

Sultan M.M., Denny R., Pande V. et al. - "Millisecond dynamics of BTK reveal kinome-wide conformational plasticity within the apo kinase domain". Nature Scientific Report 7(15604), 2017. Link

Husic B.E., Pande V. - "MSM lag time cannot be used for variational model selection". J of Chem Phys 147 (2017).
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Eastman P., Swails J, Pande V. et al. - "OpenMM 7: Rapid development of high performance algorithms for molecular dynamics". Plos Comput Biol, 2017. Link

Sultan M., Pande V. - "tICA-Metadynamics: Accelerating Metadynamics by using kinetically selected collective variables". J Chem Theory Comput, 2017. Link

Harrigan M.P., McKiernan K.A, Pande V. et al. - "Markov modeling reveals novel intracellular modulation of the human TREK-2 selectivity filter". Nature - Scient Reports 632, 2017. Link

--2016--

Schwantes C.R., Shukal D., Pande V. - "Markov State Models and tICA Reveal a Nonnative Folding Nucleus in Simulations of NuG2". Biophys J. 110(8), 2016. Link

McKiernan K.A., Wang L.P., Pande V. - "Training and Validation of a Liquid-Crystalline Phospholipid Bilayer Force Field". J Chem Theory Comp 12(12), 2016. Link

Sinitskiy A.V., Stanley N.H., Pande V. et al. - "Computationally Discovered Potentiating Role of Glycans on NMDA Receptors". Nature - Scient Reports 7, 2016. Link

Parton D.L., Grinaway P.B. et al. - "Ensembler: Enabling High-Throughput Molecular Simulations at the Superfamily Scale". PLOS Comput Biol 12(6), 2016. Link

Chodera J.D. - "A Simple Method for Automated Equilibration Detection in Molecular Simulations". J. Chem Theory Comput 12(4), 2016. Link

Hongbin W., Zhou G., Voelz V. - "A Maximum-Caliber Approach to Predicting Perturbed Folding Kinetics Due to Mutations". J Chem Theory and Comp 12(12), 2016. Link

Mukherjee S., Pantelopulos G.A., Voelz V. - "Markov models of the apo-MDM2 lid region reveal diffuse yet two-state binding dynamics and receptor poses for computational docking". Sci Rep 19(6), 2016. Link

Zhou G., Voelz V. - "Using Kinetic Network Models To Probe Non-Native Salt-Bridge Effects on a-Helix Folding". J. Phys. Chem. B 120(5), 2016. Link

--2015--

McGibbon R.T., Pande V. - "Efficient maximum likelihood parameterization of continuous-time Markov processes". J of Chem Phys 143(3), 2015. Link

Qi R., Wang L.P., Pande V. et al. - "United polarizable multipole water model for molecular mechanics simulation". J of Chem Phys 143(1), 2015. Link

Weber J.K., Shukla D., Pande V. - "Heat dissipation guides activation in signaling proteins". Proceeding Nation Acad of Science 112(33), 2015. Link

McGibbon R.T., Beauchamp K.A., Pande V. et al. - "MDTraj: A Modern Open Library for the Analysis of Molecular Dynamics Trajectories". Biophys J. 109(8), 2015. Link

Eastman P., Pande V. - "OpenMM: A Hardware Independent Framework for Molecular Simulations". Comput Sci Eng. 12(4), 2015.
Link

Vanatta D.K., Shukla D., Pande V. - "A network of molecular switches controls the activation of the two-component response regulator NtrC". Nature Communic 6(7283), 2015. Link

Shukla D., Lawrenz M, Pande V. - "Elucidating Ligand-Modulated Conformational Landscape of GPCRs Using Cloud-Computing Approaches". Methods in Enzymol 557, 2015. Link

McGibbon R.T., Pande V. - "Variational cross-validation of slow dynamical modes in molecular kinetics". J of Chem Phys 142(12), 2015. Link

Laury M.L., Wang L-P., Pande V. et al. - "Revised Parameters for the AMOEBA Polarizable Atomic Multipole Water Model". J Phys Chem B 119(29), 2015. Link

Shukla D., Pande V. et al. - "Markov state models provide insights into dynamic modulation of protein function". Acc Chem Res. 48(2), 2015. Link

Lawrenz M, Shukla D., Pande V. - "Cloud computing approaches for prediction of ligand binding poses and pathways". Scient Reports 5(7918), 2015. Link

--2014--

Shukla D., Roux B., Meng Y., Pande V. - "Activation pathway of Src kinase reveals intermediate states as targets for drug design". Nature Communications 5 (3397), 2014. Link

McGibbon R.T., Shwantes C.R., Pande V. - "Statistical Model Selection for Markov Models of Biomolecular Dynamics". J. Phys Chem B. 118(24), 2014. Link

Shukla D., Meng Y, Roux B, Pande V. - "Activation pathway of Src kinase reveals intermediate states as targets for drug design". Nature Communications 5(3397), 2014. Link

Weber J.K., Jack R.L., Schwantes C.R., Pande V. - "Dynamical Phase Transitions Reveal Amyloid-like States on Protein Folding Landscapes". Biophys J. 107(4), 2014. Link

Baiz C.R., Lin Y.S, Peng C.S, Pande V. et al. - "A Molecular Interpretation of 2D IR Protein Folding Experiments with Markov State Models". Biophys J. 106(6), 2014. Link

--2013--

Kohlhoff K.J., Shukla D., Lawrenz M, Pande V. et al. - "Cloud-based simulations on Google Exacycle reveal ligand-modulation of GPCR activation pathways". Nature Chemistry 6, 2013. Link

Mc Gibbon R., Pande V. - "Learning Kinetic Distance Metrics for Markov State Models of Protein Conformational Dynamics". J.Chem. Theory Comput. 9(7), 2013. Link

Gu C., Chang H.W., Maibaum L., Pande V. et al. - "Building Markov State Models with Solvent Dynamics". Bioinfomatics 14(2), 2013. Link

Yao Y, Bowman G.R. et al. - "Hierarchical Nyström methods for constructing Markov state models for conformational dynamics". J Chem Phys 138 (174106), 2013. Link

Schwantes C.R., Pande V. - "Improvements in Markov State Model Construction Reveal Many Non-Native Interactions in the Folding of NTL9". J.Chem. Theory Comput. 9(4), 2013. Link

Weber J.K., Jack R., Pande V. - "Emergence of Glass-like Behavior in Markov State Models of Protein Folding Dynamics". J. Americ. Chem. Soc 135(15), 2013. Link

Qiao Q., Bowman G.R. et al. - "Dynamics of an intrinsically disordered protein reveal metastable conformations that potentially seed aggregation". J. of Amer Chem Soc 135(43), 2013. Link

Lane T.J., Shukla D., Pande V. - "To milliseconds and beyond: challenges in the simulation of protein folding". Curr. Opin. Struct. Biol. 23(1), 2013. Link

Eastman P., Friedrichs M.S., Chodera J.D., Radmer R.J, Pande V. et al. - "OpenMM 4: A Reusable, Extensible, Hardware Independent Library for High Performance Molecular Simulation". J.Chem. Theory Comput. 9(1), 2013. Link

Cronkite-Ratcliff B., Pande V. - "MSMExplorer: Visualizing Markov State Models for Biomolecule Folding Simulations". Bioinformatics 29(7), 2013. Link

--2012--

Lin Y.S., Pande V. - "Effects of familial mutations on the monomer structure of AlfaBeta42". Biophys J. 103(12), 2012. Link

Ring A.M., Lin J.X., Feng D., Mitra S., Pande V. et al. - "Mechanistic and structural insight into the functional dichotomy between IL-2 and IL-15". Nature Immunol. 13(12), 2012. Link

Walker J.R., Novick P.A., Parsons W.H., Pande V. et al. - "Marked difference in saxitoxin and tetrodotoxin affinity for the human nociceptive voltage-gated sodium channel (Nav1.7)". National Academic of Science of USA 109(44), 2012. Link

Bowman G.R. - "Improved coarse-graining of Markov state models via explicit consideration of statistical uncertainty". J Chem Phys 137(134111), 2012. Link

Ring A.M, Lin J-X. et al. - "Mechanistic and structural insight into the functional dichotomy between IL-2 and IL-15". Nature Immunol 13 (1187-1195), 2012. Link

Beauchamp K.A., Mc Gibbon R., Lin Y., Pande V. - "Simple few-state models reveal hidden complexity in protein folding". PNAS 109(44), 2012. Link

Voelz V.A., Jager M., Yao S., Pande V. et al. - "Slow unfolded-state structuring in Acyl-CoA binding protein folding revealed by simulation and experiment". J. Americ. Chem. Soc 134(30), 2012. Link

Bowman G.R., Geissler P.L. - "Equilibrium fluctuations of a single folded protein reveal a multitude of potential cryptic allosteric sites". Pnas 109(29), 2012. Link

Levin A.M., Bates D.L., Ring A.M., Krieg C., Pande V. et al. - "Exploiting a natural conformational switch to engineer an interleukin-2 ‘superkine’". Nature 484 (7395), 2012. Link

Lin Y.S., Bowman G.R., Beauchamp K.A., Pande V. - "Investigating how peptide length and a pathogenic mutation modify the structural ensemble of amyloid beta monomer". Biophys J. 102(2), 2012. Link

Lane J.T., Pande V. - "A Simple Model Predicts Experimental Folding Rates and a Hub-Like Topology". J. Phys.Chem. B 116(23), 2012. Link

Novick P.A., Lopes D.H., Branson K.M. et al. - "Design of Beta-Amyloid Aggregation Inhibitors from a Predicted Structural Motif". J. Medical Chem. 55(7), 2012. Link

--2011--

Rajadas J., Liu C.W., Novick P. et al. - "Rationally designed turn promoting mutation in the amyloid beta-peptide sequence to stabilize oligomers in solution". Plos One 6(7), 2011. Link

Pronk S., Larsson P., Pouya I. et al - "Copernicus: A new paradigm for parallel adaptive molecular dynamics". Conference on High Performance Computing, 2011. Link

Beauchamp K.A., Ensign D.L., Das R., Pande V. - "Quantitative comparison of villin headpiece subdomain simulations and triplet–triplet energy transfer experiments". National Academic of Science of USA 108(31), 2012. Link

Wagoner J.A., Pande V. - "A smoothly decoupled particle interface (SDPI): new methods for coupling explicit and implicit solvent". J. Chem Phys 134(21), 2011. Link

Bowman G.R., Voelz V.A., Pande V. - "Taming the complexity of protein folding". Curr. Opin. Struct. Biol. 21(1), 2011. Link

Bowman G.R., Voelz V.A., Pande V. - "Atomistic folding simulations of the five helix bundle protein Lambda6-85". J. Chem Phys 133(4), 2011. Link

Snow C.D., Aitken C.E., Pande V. - "Non-Bulk-Like Solvent Behavior in the Ribosome Exit Tunnel". PloS Comput Biol. 6(10), 2011. Link

Eastman P., Pande V. - "Speeding development and execution speed with Just In Time GPU code development approaches". Gpu Computing Gems Emerald Edition Book, 2011. Link

Haque I., Pande V. - "Large-scale Chemical Informatics on the GPU". Gpu Computing Gems Emerald Edition Book, 2011. Link

Kasson P.M., Lindahl E., Pande V. - "Water Ordering at Membrane Interfaces Controls Fusion Dynamics". J of American Chem. Society 133(11), 2011. Link

--2010--

Haque I., Pande V. - "Hard Data on Soft Errors: A Large-Scale Assessment of Real-World Error Rates in GPGPU". 10th Cluster, Cloud and Grid Computing Conference, 2010. Link

Pande V., Beauchamp K., Bowman G.R. - "Everything you wanted to know about Markov State Models but were afraid to ask". Methods 52(1), 2010. Link

Bowman G.R, Pande V. - "Protein folded states are kinetic hubs". National Acad of Science of USA 107(38), 2010. Link

Bowman G.R, Ensign D.L., Pande V. - "Enhanced Modeling via Network Theory: Adaptive Sampling of Markov State Models". J of Chem Theory and Comput 6(3). Link

Eastman P, Pande V. - "OpenMM: A Hardware Abstraction Layer for Molecular Simulations". Computing in Science and Engineering 12, 2010. Link

Ponder J.W., Chuanjie W., Ren P., Pande V. et al. - "Current Status of the AMOEBA Polarizable Force Field". J. of Physical Chem. B. 114(8), 2010. Link

Voelz V.A., Singh V.R., Lapidus L.J., Pande V. - "Unfolded state dynamics and structure of protein L characterized by simulation and experiment". J of American Chem. Society 132(13), 2010. Link

Bowman G.R., Pande V. - "Network models for molecular kinetics and their initial applications to human health". Cell Res. 20(6), 2010. Link

DePaul A.J., Thompson E., Pande V et al. - "Equilibrium conformational dynamics in an RNA tetraloop from massively parallel molecular dynamics". Nucleic Acid Res. 38(14), 2010. Link

DePaul A.J., Thompson E., Patel S.S., Sorin E.J. - "Evaluating Molecular Mechanical Potentials for Helical Peptides and Proteins". PloS One 5(4), 2010. Link

Pande V. - "A simple theory of protein folding kinetics". Phys Rev Lett. 105(19), 2010. Link

Bowman G.R., Pande V. - "Protein folded states are kinetic hubs". National Acad of Science of USA 107(38), 2010. Link

Kasson P.M., Lindahl E., Pande V. - "Atomic-Resolution Simulations Predict a Transition State for Vesicle Fusion Defined by Contact of a Few Lipid Tails". PloS One 6(6), 2010. Link

Voelz V.A., Bowman G.R., Beauchamp K., Pande V. - "Molecular Simulation of ab Initio Protein Folding for a Millisecond Folder NTL9(1-39)". J. of American Chem Society 132(5), 2010. Link

--2009--

Bacallado S., Chodera J.D., Pande V. - "Bayesian comparison of Markov models of molecular dynamics with detailed balance constraint". J. Chem Phys. 131(4), 2009. Link

Kasson P.M., Ensign D.L., Pande V. - "Combining Molecular Dynamics with Bayesian Analysis To Predict and Evaluate Ligand-Binding Mutations in Influenza Hemagglutinin".  J. of American Chem Society 131(32), 2009. Link

Bowman G.R., Pande V. - "The Roles of Entropy and Kinetics in Structure Prediction". PloS One 4(6), 2009. Link

Larson S.M., Snow C.D., Shirts M., Pande V. - "Folding@home and Genome@Home: Using distributed computing to tackle previously intractable problems in computational biology". ArXiv, 2009. Link

Bowman G.R., Pande V., Huang X. - "Using generalized ensemble simulations and Markov state models to identify conformational states". Methods 49(2), 2009. Link

Beberg A.L., Ensign D.L., Pande V. et al. - "Folding@home: lessons from eight years of distributed computing". IEEE Symposium on Parallel and Distribuited Processing, 2009. Link

Voelz V.A., Luttmann E., Pande V. et al. - "Probing the nanosecond dynamics of a designed three-stranded beta-sheet with massively parallel molecular dynamics simulation". Int. J. Mol. Sci. 10(3), 2009. Link

Voelz V.A., Petrone P., Pande V. - "A multiscale approach to sampling nascent peptide chains in the ribosomal exit tunnel". Pac. Symp. Biocomputing, 2009. Link

Ensign D.L., Pande V. - "The Fip35 WW Domain Folds with Structural and Mechanistic Heterogeneity in Molecular Dynamics Simulations". Biophys J. 96(8), 2009. Link

Friedrichs M.S, Eastman P., Pande V. et al. - "Accelerating Molecular Dynamic Simulation on Graphics Processing Units". J. Comput. Chem. 30(6), 2009. Link

Kelley N.W., Huang X., Frydman J, Pande V. - "The predicted structure of the headpiece of the Huntingtin protein and its implications on Huntingtin aggregation". J. Molec. Biol. 388(5), 2009. Link

Kasson P.M., Pande V. - "Combining Mutual Information with Structural Analysis to Screen for Functionally Important Residues in Influenza Hemagglutinin". Pac. Symp. Biocomputing, 2009. Link

Luttmann E., Ensign D.L., Pande V. et al. - "Accelerating Molecular Dynamic Simulation on the Cell processor and PlayStation 3". J. Comput. Chem. 30(2), 2009. Link

Petrone P.M., Snow C.D., Pande V. - "Side-chain recognition and gating in the ribosome exit tunnel". National Acad. of Science of USA 105(43), 2009. Link

--2008--

Kelley N.W., Vishal V., Krafft G.A., Pande V. - "Simulating oligomerization at experimental concentrations and long timescales: A Markov state model approach".  J. Chem Phys. 129(21), 2008. Link

Bowman G.R., Huang X., Yao Y., Pande V. et al. - "Structural Insight into RNA Hairpin Folding Intermediates". J. of American Chem Society 130(30), 2008. Link

Huang X, Bowman G.R., Pande V. - "Convergence of folding free energy landscapes via application of enhanced sampling methods in a distributed computing environment". J. Chem Phys. 128(20), 2008. Link

--2007--

Elsen E., Vishal V., Houston M., Pande V. et al. - "N-Body simulation on GPUs". ArXiv, 2007. Link

Hinrichs N.S., Pande V. - "Calculation of the distribution of eigenvalues and eigenvectors in Markovian state models for molecular dynamics". J. Chem Phys. 126(24), 2007.  Link

Ensign D.L., Kasson P.M., Pande V. - "Heterogeneity Even at the Speed Limit of Folding: Large-scale Molecular Dynamics Study of a Fast-folding Variant of the Villin Headpiece". J. Molec. Biol. 374(3), 2007. Link

Kasson P.M., Pande V. - "Control of Membrane Fusion Mechanism by Lipid Composition: Predictions from Ensemble Molecular Dynamics". PloS Comput. Biol. 3(11), 2007.  Link

Kasson P.M., Zomorodian A., Park S., Pande V. et al. - "Persistent voids: a new structural metric for membrane fusion". Bioinformatics 23(14), 2007. Link

Del Lucent, Vishal V., Pande V. - "Protein folding under confinement: a role for solvent". National Acad. of Science of USA 104(25), 2007. Link

Chodera J.D., Singhal N., Pande V. et al. - "Automatic discovery of metastable states for the construction of Markov models of macromolecular conformational dynamics". J. Chem Phys. 126(15), 2007. Link

Beberg A.L., Pande V. - "Storage@home: Petascale Distributed Storage". IEEE International Parallel and Distributed Processing Symposium, 2007. Link

Kasson P.M., Pande V. - "Predicting structure and dynamics of loosely-ordered protein complexes: influenza hemagglutinin fusion peptide". Pac Symp Biocomp 2007. Link

--2006--

Park S., Ensign D.L., Pande V. - "A Bayesian Update Method for Adaptive Weighted Sampling". Phys. Rev. E 74, 2006. Link

Jayachandran G., Vishal V, Garcia A.E., Pande V. - "Local structure formation in simulations of two small proteins". J. Struct. Biol. 157(3), 2006. Link

Snow C.D., Rhee Y.M., Pande V. - "Kinetic Definition of Protein Folding Transition State Ensembles and Reaction Coordinates". Biophys J. 91(1), 2006. Link

Jayachandran G., Shirts M.R., Pande V. - "Parallelized Over Parts Computation of Absolute Binding Free Energy with Docking and Molecular Dynamics". J. of Chem Phys 125, 2006. Link

Jayachandran G., Shirts M.R., Pande V. - "Folding Simulations of the Villin Headpiece in All-Atom Detail". J. of Chem Phys 124, 2006. Link

Kasson P.M., Kelley N.W., Pande V. et al. - "Ensemble molecular dynamics yields submillisecond kinetics and intermediates of membrane fusion". National Acad of Science of USA 103(32), 2006. Link

Suydam I.T., Snow C.D., Boxer S.G, Pande V. - "Electric Fields at the Active Site of an Enzyme: Direct Comparison of Experiment with Theory". Science 313(5784), 2006. Link

Chong L.T., Swope W.C., Pitera J.W, Pande V. - "Kinetic Computational Alanine Scanning: Application to p53 Oligomerization". J. Molec. Biol. 357(3), 2006. Link

Park S., Pande V. - "Validation of Markov state models using Shannon’s entropy". J. Chem. Phys 124(5), 2006. Link

Rhee Y.M., Pande V. - "On the role of chemical detail in simulating protein folding kinetics". Chem Phys 323, 2006. Link

Sorin E.J., Pande V. - "Nanotube confinement denatures protein helices". J. of American Chem Society 128(19), 2006. Link

--2005--

Sorin E.J., Rhee Y.M., Shirts M.R., Pande V. - "The solvation interface is a determining factor in peptide conformational preferences". J. Molec. Biol. 356(1), 2005. Link

Petrone P., Pande V. - "Can conformational change be described by only a few normal modes?". Biophys J. 90(5), 2005. Link

Zagrovic B., Jayach G., Millet I.S., Doniach S., Pande V. - "How large is alpha-helix in solution? Studies of the radii of gyration of helical peptides by SAXS and MD". J. Molec. Biol. 353(2), 2005. Link

Singhal N., Pande V. - "Error Analysis in Markovian State Models for protein folding". J. Chem. Phys 123(12), 2005. Link

Fujitani H., Tanida Y., Ito M., Pande V. et al. - "Direct calculation of the binding free energies of FKBP ligands". J. Chem. Phys 123(8), 2005. Link

Park S., Radmer R.J., Klein T.E., Pande V. - "A New Set of Molecular Mechanics Parameters for Hydroxyproline and Its Use in Molecular Dynamics Simulations of Collagen-Like Peptides". J. Comput. Chem. 26(15), 2005. Link

Shirts M.R., Pande V. - "Comparison of efficiency and bias of free energies computed by exponential averaging, the Bennett acceptance ratio, and thermodynamic integration". J. Chem. Phys 122(14), 2005. Link

Shirts M.R., Pande V. - "Solvation free energies of amino acid side chain analogs for common molecular mechanics water models". J. Chem. Phys 122(13), 2005. Link

Elmer S.P., Park S., Pande V. - "Foldamer dynamics expressed via Markov state models. I. Explicit solvent molecular-dynamics simulations in acetonitrile, chloroform, methanol, and water". J. Chem. Phys 123(11), 2005. Link

Elmer S.P., Park S., Pande V. - "Foldamer dynamics expressed via Markov state models. II. State space decomposition". J. Chem. Phys 123(11), 2005. Link

Zagrovic B., Lipfert J., Sorin E.J., Pande V. et al. - "Unusual compactness of a polyproline type II structure". National Acad of Science of USA 102(33), 2005. Link

Snow C.D., Sorin E.J., Rhee Y.M., Pande V. - "How well can simulation predict protein folding kinetics and thermodynamics?". Annual Review of Biophy and Biomolec Struct 34, 2005. Link

Sorin E.J., Pande V. - "Empirical Force-Field Assessment: The Interplay Between Backbone Torsions and Noncovalent Term Scaling". J. Comput. Chem. 26(7), 2005. Link

Sorin E.J., Pande V. - "Exploring the Helix-Coil Transition via All-atom Equilibrium Ensemble Simulations". Biophys J. 88(4), 2005. Link

Sorin E.J., Rhee Y.M., Pande V. - "Does Water Play a Structural Role in the Folding of Small Nucleic Acids?". Biophys J. 88(4), 2005. Link

Chong L.T., Snow C.D., Rhee Y.M., Pande V. - "Dimerization of the p53 Oligomerization Domain: Identification of a Folding Nucleus by Molecular Dynamics Simulations". J. Molec. Biol. 345(4), 2005. Link

--2004--

Singhal N., Snow C.D., Pande V. - "Using path sampling to build better Markovian state models: Predicting the folding rate and mechanism of a tryptophan zipper beta hairpin". J. Chem. Phys 121(1), 2004. Link

Sorin E.J., Rhee Y.M., Pande V. et al. - "Simulations of the role of water in the protein-folding mechanism". National Acad of Science of USA 101 (17), 2004. Link

Snow C.D., Qiu L., Du D., Gai F., Hagen S.J., Pande V. - "Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy". National Acad of Science of USA 101(12), 2004. Link

Sorin E.J., Rhee Y.M., Vishal V., Pande V. et al. - "Does Native State Topology Determine the RNA Folding Mechanism?". J. Molec. Biol. 337(4), 2004. Link

--2003--

Zagrovic B., Pande V. - "Structural correspondence between the alpha-helix and the random-flight chain resolves how unfolded proteins can have native-like properties". Nat. Struc. Biol. 10(11), 2003. Link

Shirts M.R., Bair E., Hooker G., Pande V. - "Equilibrium Free Energies from Nonequilibrium Measurements Using Maximum-Likelihood Methods". Phys. Rev. Lett. 91(14), 2003. Link

Shirts M.R., Pitera J.W., Swope W:C., Pande V. - "Extremely precise free energy calculations of amino acid side chain analogs: Comparison of common molecular mechanics force fields for proteins". J. Chem. Phys. 119(11), 2003. Link

Zagrovic B., Pande V. - "Solvent Viscosity Dependence of the Folding Rate of a Small Protein: Distributed Computing Study". J. Comput. Chem. 24(12), 2003. Link

Sorin E.J., Rhee Y.M., Nakatani B.J., Pande V. - "Insights Into Nucleic Acid Conformational Dynamics from Massively Parallel Stochastic Simulations". Biophys. J. 85(2), 2003. Link

Pande V., Baker I, Chapma J., Elmer S.P. et al. - "Atomistic protein folding simulations on the submillisecond timescale using worldwide distributed computing". Biopolymers 68(1), 2003. Link

Rhee Y.M., Pande V. - "Multiplexed-Replica Exchange Molecular Dynamics Method for Protein Folding Simulation". Biophys. J. 84(2 pt1), 2003. Link

--2002--

Snow C.D., Zagrovic B., Pande V. - "The Trp Cage: Folding Kinetics and Unfolded State Topology via Molecular Dynamics Simulations". J. of American Chem Society 124(49), 2002. Link

Snow C.D., Nguyen H., Pande V., Grubele M. - "Absolute comparison of simulated and experimental protein-folding dynamics". Nature 420(6911), 2002. Link

Zagrovic B., Snow C.D., Khaliq S., Shirts M.R., Pande V. - "Native-like Mean Structure in the Unfolded Ensemble of Small Proteins". J. Molec. Biol. 323(1), 2002. Link

 Zagrovic B., Snow C.D., Shirts M.R., Pande V. - "Simulation of Folding of a Small Alpha-helical Protein in Atomistic Detail using Worldwidedistributed Computing". J. Molec. Biol. 323(5), 2002. Link

--2001--

Zagrovic B., Sorin E.J., Pande V. - "Beta-Hairpin Folding Simulations in Atomistic Detail Using an Implicit Solvent Model". J. Molec. Biol. 313(1), 2001. Link

Shirts M.R., Pande V. - "Mathematical Foundations of ensemble dynamics". Phys. Rev. Lett. 86, 2001. Link

--2000--

Shirts M.R., Pande V. - "Screen savers of the world, Unite!". Science 290(5498), 2000. Link

SU/UP

Fold.it

2024 - 2023 - 2022 - 2020 - 2019 - 2018 - 2017 - 2016 - 2014 - 2013 - 2012 - 2011 - 2010 - About Foldit

--2024--

Ahlstedt C., Bennet A. et al. - "Design to Data for mutants of ß-glucosidasi B from Paenibacillus polymyxa: L171M, H178M, M221L, E406W, N160E, F415M". Lux et Fide 2, 2024. Link

Wakelin D.J. - "New to Nature C–C bond Forming Cyclases: Pushing the Boundaries of ring Forming Reactions". Phd Thesis, 2024. Link

--2023--

Guan E., Fu Y. -"Fold It: Creating Foldable 3D Volumes From Planar 2D Surfaces". 8th ACM Symp on Comput Fabric, 2023. Link

Ponce S., Gordon K. - "Characterizing the Enzymatic Activity and Thermostability of Protein ß-Glucosidase B (BglB) Mutant Y118F". CELTS Undergraduate Research and Engagement, 2023. Link

--2022--

Sahtoe D.D., Praetorius F. et al. - "Reconfigurable asymmetric protein assemblies through implicit negative design". Science 375(6578), 2022. Link

--2020--

Panou D.N., Reczko M. - "DeepFoldit -- A Deep Reinforcement Learning Neural Network Folding Proteins". Arxiv, 2020. Link

Norn C., Juergens D. et al. - "Protein sequence design by explicit energy landscape optimization". Biorxiv, 2020. Link

Liu Y., Moretti R. et al. - "Foldit Drug Design Game Usability Study: Comparison of Citizen and Expert Scientists". Proc of Motion, Interaction and Games 2020. Link

Miller J.A., Khatib F. et al. - "Introducing Foldit Education Mode". Nature Struct and Molec Biol 27 (769-770), 2020. Link

--2019--

Khatib F., Desfosses A. et al. - "Building de novo cryo-electron microscopy structures collaboratively with citizen scientists". Plos Biology 17(11), 2019. Link

Koepnick B., Flatten J. et al. - "De novo protein design by citizen scientists". Nature 570 (390-394), 2019. Link

Dsilva L., Mittal S. et al. - "Creating Custom Foldit Puzzles for Teaching Biochemistry". Biochem and Molec Biol Educ 47(2), 2019. Link

Muender T., Gulani S.A. et al. - "Comparison of mouse and multi-touch for protein structure manipulation in a citizen science game interface". Jour of Science Communic 18(1), 2019. Link

--2018--

Cooper S., Sterling A.L. et al. - "Repurposing citizen science games as software tools for professional scientists". 13th Int Conf on the Foundations of Digital Games (Article 39), 2018. Link

Cooper S., Horn B. et al. - "A Monte Carlo Approach toSkill-Based Automated Playtesting". Proc of 14th Artificial Intell and Interact Game, 2018. Link

Ponti M., Stankovic I. et al. - "Chefs Know More than Just Recipes: Professional Vision in a Citizen Science Game". Human Computation 5, 2018. Link

Keasar C., Crivelli S., Foldit Players et al. - "An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12". Nature Scientif Rep 8(9939), 2018. Link

--2017--

Bauer A., Popovic Z. - "Collaborative Problem Solving in an Open-Ended Scientific Discovery Game". Proc of ACM Human-Comput Interact 1(22), 2017. Link

Kleffner R., Flatten J., Baker D. et al. - "Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta". Bionformatics 33(17), 2017. Link

--2016--

Cooper S., Deterding S., Tsapakos T. - "Player Rating Systems for Balancing Human Computation Games: Testing the Effect of Bipartiteness". 1st DIGRA/FDG Conf, 2016. Link

Hsiao D.Y., Cooper S., Popovic Z. et al. - "Proactive Sensing for Improving Hand Pose Estimation". Conf on Human Computer Interact (CHI), 2016. Link

Yee J.A. - "Characterizing crowd participation and productivity of foldit through web scraping". Phd Thesis, 2016. Link

Horowitz S., Koepnick B., Foldit playest et al. - "Determining crystal structures through crowdsourcing and coursework". Nature Comunic 7(12549), 2016. Link

--2014--

Khoury G.A., Liwo A., Khatib F., Zhou H., Foldit players et al. - "WeFold: A Coopetition for Protein Structure Prediction". Proteins:Structure,Function and Bioinformatics 82, 2014.  Link

Hsiao D.Y., Cooper S., Popovic Z. et al. - "User Behavior Transformation through Dynamic Input Mappings". Foundation of digital games, 2014. Link

--2013--

Cooper S., Khatib F., Baker D. - "Increasing Public Involvement in Structural Biology". Structure 21(9), 2013. Link

--2012--

Eiben C.B., Siegel J.B., Bale J.B., Cooper S., Baker D., Foldit players et al. - "Increased Diels-Alderase activity through backbone remodeling guided by Foldit players". Nature Biotechnology 30(2), 2012. Link

Khoury G.A., Khatib F., Zhou H, Foldit players et al. - "Hybrid Human Protein Structure Prediction via the Online Multiplayer Game Foldit Coupled with an Iterative Clustering Approach for Selection of Near-Native Structures, Knowledge-Based Refinement, and State-of-the-Art Scoring Functions". CASP10, 2012. Link

Bortot L.O., Faccioli R.A., Foldit players et al. - "WeFold community . Application of Replica Exchange Molecular Dynamics with Implicit Solvation for Refinement of Collaboratively Generated and Ranked Models". CASP 10 Meeting, 2012. Link

--2011--

Cooper S. - "A Framework for Scientific Discovery through Video Games". Phd Thesis, 2011. Link

Cooper S., Khatib F., Makedon I., Barbero J., Baker D., Foldit players et al. - "Analysis of social gameplay macros in the Foldit cookbook".  6th International Conference on the Foundations of Digital Games, 2011. Link

Gilski M., Kazmierczyk M., Krzywda S., Zábranská H., Cooper S."High-resolution structure of a retroviral protease folded as a monomer". Acta Crystallographica D67, 2011. Link

Khatib F., Cooper S., Tyka M.D., Xu K., Makedon I., Popovic Z., Baker D., Foldit players - "Algorithm discovery by protein folding game players". National Academy of Sciences of USA 108(47), 2011. Link

Khatib F., DiMaio F., Cooper S., Kazmierczyk M., Foldit players et al. - "Crystal structure of a monomeric retroviral protease solved by protein folding game players". Nature Structural and Molecular Biology 18, 2011. Link

--2010--

Cooper S., Khatib F., Treuille A., Baker D., Foldit players et al. - "Predicting protein structures with a multiplayer online game". Nature 466, 2010. Link

Cooper S., Treuille A., Barbero J., Leaver-Fay A., Baker D., Foldit players et al. - "The challenge of designing scientific discovery games". 5th International Conference on the Foundations of Digital Games, 2010. Link

Su Fold.IT (About Fold.IT)

Sujatmika S., Masykuri M. et al. - "Fostering Critical Thinking Skills: The Role of Simulations in Science Education". Bulletin Edukasi Indonesia 3(03), 2024. Link

Miller J.A., Buse K. et al. - "Wrapped in Story: The Affordances of Narrative for Citizen Science Games". 18th Intern Conf on the Found of Digital Games 33, 2023. Link

Milburn C., Buse K. et al. - "Join the Fold: Video Games, Science Fiction, and the Refolding of Citizen Science". Desing Issues 39(1), 2023. Link

Zahra T. - "Pivoting from Laboratory to Remote Research Using the Online Game Foldit". Scholarship and Practice of Undergrad Research 4(4), 2021. Link

Ballard E. - "What Is FoldIt?". Ideas: Catalog for the Honor College 5, 2021. Link

Panou D.N., Rezcko M. - "DeepFoldit - A Deep Reinforcement Learning Neural Network Folding Proteins". Arxiv, 2020.
Link

Das R., Keep B. et al. - "Scientific Discovery Games forBiomedical Research". Annual Review of Biomed Data Science 2(253), 2019. Link

Curtis V. - "Exploring Online Citizen Science in Depth: A Tale of Three Projects". Online Cit Science and Widening of Academia Book, 2018. Link

Ponti M., Hillman T. et al. - "Getting it Right or Being Top Rank: Games in Citizen Science".  Citizen Science: Theory and Practice 3(1), 2018. Link

Ponti M., Stankovic I. - "Chefs Know More than Just Recipes: Professional Vision in a Citizen Science Game". Human Computation 5, 2018. Link

Gaston J., Cooper S. - "To Three or not to Three: Improving Human Computation Game Onboarding with a Three-Star System". Proc of the 2017 CHI Conf on Human Factors in Comp Systems, 2017. Link

Ponti M., Hilman T. et al. - "Science and Gamification: The Odd Couple?". Proc of the 2015 Ann Symp on Computer-Human Interaction in Play, 2015. Link

Curtis V. - "Motivation to Participate in an Online Citizen Science Game A Study of Foldit". Science Commun 37(6), 2015. Link

Parslow G.R. - "Commentary: crowdsourcing, Foldit, and scientific discovery games".  Biochem Mol. Biol. Educ 41(2), 2013. Link

Farley P.C. - "Using the computer game "FoldIt" to entice students to explore external representations of protein structure in a biochemistry course for nonmajors". Biochem Mol. Biol. Educ 41(1), 2013. Link

Good B.M., Al S. - "Games with a scientific purpose". Genome Biol. 12(12), 2011. Link

SU/UP

Gimps

Ibrahim M. - "On the Eight Levels theorem and applications towards Lucas-Lehmer primality test for Mersenne primes, I". Arab J of Basic and Applied Science 30, 2023. Link

Scott Williams R. - "How Big is the “Biggest” Prime Number?". Math Horizons 28, 2021. Link

Aguledo Y.A.A. - "A Complete classification of the Mersenne’s Primes and it's implications for computing". Revista Politecnica 16(32), 2020. Link

Pranav N., Sharma P.N. - "Demonstration and Proof of a Unique Property of Mersenne Primes". 86th Annual Conf of the Indian Math Society, 2020. Link

Cossin D. - "The call of the primes". NewScientist 243(3242), 2019. Link

Lamb E. - "The largest known prime number". The best writing on mathematics, 2017. Link

Childers G. - "Factorization of a 1061-bit number by the Special Number Field Sieve". 2012. Link

Woltman G., Kurowsky S. - "On the discovery of the 45th and 46th known Mersenne Primes". Fibonacci Quaterly 3(3), 2008. Link

Ziegler G.M. - "The Great Prime Number Record Races". Notice of Americ Math Society 51(4), 2004. Link

Wanko J.J, Venable C.H. - "Investigating Prime Numbers and The Great Internet Mersenne Prime Search". Mathematics teaching in the Middle School 8(2), 2002. Link

Buske D., Keith S. - "GIMPS Finds Another Prime!". Math Orizon 7, 2000. Link

Woltman G. - "On the discovery of the 38th known Mersenne Prime". 1999. Link

Gage J.S. - "The great Internet Mersenne prime search". MD Comput. 15(4), 1998. Link

SU/UP

HashClash

Stevens M., Bursztein E. et al. - "The first collision for full SHA-1". Crypto 2017. Link

Stevens M., Kaplan P. et al. - "Freestart collision for full SHA-1". 35th Conf on Advanced in Cryptology, Eurocrypt 2016. Link

Kaplan P., Stevens M. et al. - "Practical Free-Start Collision Attacks on 76-step SHA-1". Crypto 2015. Link

Stevens M. - "Attacks on Hash Functions and Applications". Phd Thesis, 2012. Link

Stevens M. - "Single-block collision attack on MD5". Cryptology ePrint Archive 40, 2012. Link

Stevens M., Lenstra A. and De Weger B. - "Chosen-prefix Collisions for MD5 and Applications". Journal of Cryptology 2(4), 2012. Link

Stevens M., Lenstra A., De Weger B. et al - "Short Chosen-Prefix Collisions for MD5 and the Creation of a Rogue CA Certificate". Crypto 2009. Link

Stevens M. - "On Collisions for MD5". Master Thesis 2007. Link

Stevens M., Lenstra A., and De Weger B. - "Chosen-prefix Collisions for MD5 and Colliding X.509 Certificates for Different Identities". Lecture Notes in Computer Science 4515, 2007. Link

Stevens M. - "Fast Collision Attack on MD5". Cryptology ePrint Archive 104, 2006. Link

Stevens M., Lenstra A., De Weger B. - "Target Collisions for MD5 and Colliding X.509 Certificates for Different Identities". Cryptology ePrint Archive 360, 2006. Link

Hydrology

Agliamzanov R., Sit M. et al. - "Hydrology@Home: a distributed volunteer computing framework for hydrological research and applications". Hydroinformatics 22(2), 2020. Link

SU/UP

LifeMapper

Williams N.P., Stewart A.M. et al. - "Virtualizing Lifemapper Software Infrastructure for Biodiversity Expedition". Concurrency and Computation 29(13), 2017. Link

Cavner J.A., Beach J., Stewart A.M. et al. - "Phylogeography and MetaCommunity". Gis Day Conf, 2014. Link

Cavner J.A., Stewart A.M. et al. - "Adding Phylogenies to QGIS and Lifemapper for Evolutionary Studies of Species Diversity". FOSS4G Conference Vol 14(4), 2014. Link

Del Rio N., Villanueva-Rosales N. et al. - "ELSEWeb Meets SADI: Supporting Data-to-Model Integration for Biodiversity Forecasting". AAAI Fall Conf, 2013. Link

Cavner J.A., Stewart A.M. et al. - "An innovative Web Processing Services based GIS architecture for global biogeographic analyses of species distributions". OSGeo Journal 10, 2012. Link

Stewart A. - "LifeMapper: Open Source Geospatial Tools for the Biological Community". GIS Day at Kansas University, 2008. Link

Stockwell D.R.B., Beach J.H., Stewart A., et al. - "The use of the GARP genetic algorithm and internet grid computing in the Lifemapper world atlas of species biodiversity". Ecological Modeling, 2006. Link

Beach J.H., Stewart A.M., Vorontsov G.Y., et al. - "The Future of Biodiversity: Mapping and Predicting the Distribution of Life with Distributed Computation".  ESRI User Conference, 2002. Link

SU/UP

Mark2Cure

Tseung G., Kumar A. et al. - "Aligning Needs: Integrating Citizen Science Efforts into Schools Through Service Requirements". Human Computation 6(1), 2019. Link

Tsueng G., Nanis M. et al. - "Applying Citizen Science to Gene, Drug, Disease Relationship Extraction from Biomedical Abstracts." Bioinformatics 678, 2019. Link

Tsueng G., Kumar A. et al. - "Aligning interests: Integrating Citizen Science Efforts into Schools Through Service Requirements". Human Comput 6(1), 2019. Link

Tseung G., Nanis S.M, Fouquier J. et al. - "Citizen Science for Mining the Biomedical Literature". Citizen Science: Theory and Practice 1(2), 2016. Link

Benjamin M.G., Nanis M. et al. - "Microtask crowdsourcing for disease mention annotation in PubMed abstracts". Pac Symp Biocomput, 2015. Link

SU/UP

Models (Closed)

Krieger M., Vried G. - "Models@Home: distributed computing in bioinformatics using a screensaver based approach". Bioinformatics 18(2), 2002. Link

SU/UP

Muon1

Brooks S. - "FFAG Cell Candidate February 2017". CBETA Machine Note 9, 2017. Link

Brooks S. - "Muon capture schemes for the Neutrino Factory". Phd Thesis, 2010. Link

SU/UP

Phylo

Waldispuhl J., Sznatner A. et al. - "Leveling up citizen science". Nature Biotech 28 (1124-1126), 2020. Link

Baaden M., Delalande O. et al. - "Ten simple rules to create a serious game, illustrated with examples from structural biology". Plos Comput Biol 14(3), 2018. Link

Singh A., Ahsan F. et al. - "Lessons from an online massive genomics computer game". 5th AAAI Conf on Human Comput and Crowd, 2017. Link

William S. - "Biology: A Game for a Crowd". Biomed Comput. Review, 2014. Link

Kwak D., Kam A., Becerra D., Zhou Q. et al. - "Open-Phylo: a customizable crowd-computing platform for multiple sequence alignment". Genome Biol. 14(10), 2013. Link

Kawrykow A., Roumanis G., Kam A., Kwak D. et al. - "Phylo: a citizen science approach for improving multiple sequence alignment". PloS One 7(3), 2012. Link

SU/UP

Rad

Hota A., Konar C. et al. - "Tracking Galaxy Evolution Through Low-Frequency Radio Continuum Observations using SKA and Citizen-Science Research using Multi-Wavelength Data". J of Astrophys and Astronomy 37(4), 2016. Link

Hota A., Croston J.H. et al. - "New results on the exotic galaxy `Speca' and discovering many more Specas with RAD@home network". ASI Conf 13, 2014. Link

SU/UP

SetiLive

Klimenko S., Konich K. et al. - "StarWatch 3.0: Visualizing Wave Patterns of Phased Array Radio Telescopes". Int Conf of Cyberworlds, 2017. Link

Klimenko S., Klimenko A., Konich K. et al. - "Methods of Registration of Weak Radio Signals". Lectur Notes in Comp Science XXIX, 2017. Link

Klimenko S., Nikitin I. et al. - "StarWatch 2.0: RFI Filter for SETI Signals". Intern Conf on CyberWorlds (CW), 2016. Link

Konich K, Nikitin I., Klimenko S. et al. - "Radio Astronomical Monitoring in Virtual Environment". Procedia Computer Science 66, 2015. Link

Nikitin I. - "Statistical analysis of narrow-band signals at setilive.org". In Press. Link

SU/UP

Seventeen Or Bust (Closed)

Helm L. - "Colbert Number". MathWorld Wolfram Web Resource, 2009. Link

Helm L., Moore P., Samidoost P., Woltman G. - "Resolution of the Mixed Sierpinski Problem." Integers: Elec. J. Combin. Numb. Th. 8(A61), 2008. Link

Helm L., Norris D. - "Seventeen or Bust: a distribuited attack on Sierpinski Problem". NSDL Scout Report for Math 1(17), 2002. Link

Stall Catchers (Eyes on ALZ)

Ghosh P., Istiak M.A. et al. - "A Sequence Agnostic Multimodal Pre-Processing for Clogged Blood Vessel Detection in Alzheimer’s Diagnosis". IEEE Intern Conf on Acust, Speech and Signal Process, 2023. Link

Ali M., Falkenhain K. et al. -  "VEGF signalling causes stalls in brain capillaries and reduces cerebral blood flow in Alzheimer’s mice". Brain (Awab387), 2022. Link

Nugent J. - "Accelerating Alzheimer’s Research With Stall Catchers". The Science Teacher 88(4), 2021. Link

Solovyev R., Kalinin A.A. et al. - "3D Convolutional Neural Networks for Stalled Brain Capillary Detection". Arxiv 2021.
Link

Ali M., Falkenhain K. et al. - "Inhibition of peripheral VEGF signaling rapidly reduces leucocyte obstructions in brain capillaries and improves cortical blood flow in an Alzheimer’s disease mouse model". ALZ & Dementia Journ 16(S3), 2020. Link

Bracko O., Vinarcsik L.K. et al. - "High fat diet worsens Alzheimer’s disease-related behavioral abnormalities and neuropathology in APP/PS1 mice, but not by synergistically decreasing cerebral blood flow". Scientific Reports 10, 2020. Link

Falkenhain K., Ruiz-Uribe N. et al. - "A pilot study investigating the effects of voluntary exercise on capillary stalling and cerebral blood flow in the APP/PS1 mouse model of Alzheimer’s disease". Link

Nuget J. - "Game for good with Stall Catchers citizen science". Science Scope 42(7), 2019. Link

SU/UP

Stardust@Home

2024 - 2017 - 2014 - 2013 - 2011 - 2010 - 2009 - 2007- 2005

--2024--

Zolensky M. - "Curation of Comet 81P/Wild 2 Coma Dust and Fresh Interstellar Dust From the Stardust Mission". EXMAG Meeting, 2024. Link

--2017--

Westphal A.J., Trieloff M. - "More than 30 000 volunteers involved in identification of tiny rare interstellar dust particle candidates collected by the Stardust mission". Heidelberg Jarbucher BD.2, 2017. Link

--2014--

Westphal A.J., Bechtel H.A., Brenker F.E. et al. - "Final reports of the Stardust Interstellar Preliminary Examination". Meteoritics & Planetary Science 49 (9), 2014. Link

Stroud R.M., Allen C., Ansari A. et al. - "Stardust Interstellar Preliminary Examination XI: Identification and elemental analysis of impact craters on Al foils from the Stardust Interstellar Dust Collector". Meteoritics & Planetary Science 49 (9), 2014. Link

Sterken V.J., Westphal A.J., Altobelli N. - "Stardust Interstellar Preliminary Examination X: Impact speeds and directions of interstellar grains on the Stardust dust collector". Meteoritics & Planetary Science 49 (9), 2014. Link

Postberg F., Hillier J.K., Armes S.P. et al. - "Stardust Interstellar Preliminary Examination IX: High-speed interstellar dust analog capture in Stardust flight-spare aerogel". Meteoritics & Planetary Science 49 (9), 2014. Link

Gainsforth Z., Brenker F.E., Simionovici A.S. et al. - "Stardust Interstellar Preliminary Examination VIII: Identification of crystalline material in two interstellar candidates". Meteoritics & Planetary Science 49 (9), 2014. Link

Flynn G.J., Sutton S.R. et al. - "Stardust Interstellar Preliminary Examination VII: Synchrotron X-ray fluorescence analysis of six Stardust interstellar candidates measured with the Advanced Photon Source 2-ID-D microprobe". Meteoritics & Planetary Science 49 (9), 2014. Link

Simionovici A.S., Lamelle L. et al. - "Stardust Interstellar Preliminary Examination VI: Quantitative elemental analysis by synchrotron X-ray fluorescence nanoimaging of eight impact features in aerogel". Meteoritics & Planetary Science 49 (9), 2014. Link

Brenker F.E., Westphal A.J., Vincze L. et al. - "Stardust Interstellar Preliminary Examination V: XRF analyses of interstellar dust candidates at ESRF ID13". Meteoritics & Planetary Science 49 (9), 2014. Link

Buttherworth A., Westphal A.J., Tyliszczak T. et al. - "Stardust Interstellar Preliminary Examination IV: Scanning transmission X-ray microscopy analyses of impact features in the Stardust Interstellar Dust Collector". Meteoritics & Planetary Science 49 (9), 2014. Link

Bechtel H.A., Flynn G.J., Allen C. et al. - "Stardust Interstellar Preliminary Examination III: Infrared spectroscopic analysis of interstellar dust candidates". Meteoritics & Planetary Science 49 (9), 2014. Link

Frank D.R., Westphal A.J., Zolensky M.E. et al. - "Stardust Interstellar Preliminary Examination II: Curating the interstellar dust collector, picokeystones, and sources of impact tracks".Meteoritics & Planetary Science 49 (9), 2014. Link

 Westphal A.J., Anderson D.A., Buttherworth A. et al. - "Stardust Interstellar Preliminary Examination I: Identification of tracks in aerogel". Meteoritics & Planetary Science 49 (9), 2014. Link

 Westphal A.J., Stroud R.M, Bechtel H.A. et al. - "Evidence for interstellar origin of seven dust particles collected by the Stardust spacecraft". Science 345(6198), 2014. Link

--2013--

Westphal A.J., De Gregorio B., Lettieri R. et al. - "Community Supported Stardust Compendia". NASA Technical Report 20130004203, 2013. Link

--2011--

Westphal A.J., Allen C., Bajt S. et al. - "Constraints on the Interstellar Dust Flux Based on Stardust@Home Search Results". 42th NASA Lunar and Planetary Science Conference, 2011. Link

--2010--

Westphal A.J., Buttherworth A., Frank D. et al. - "Discovery of Interstellar Dust Candidates in Stardust aerogel collectors through Stardust@home". Fall Meeting of American Geophysical Union, 2010. Link

Westphal A.J., Allen C. et al. - "Two interstellar dust candidates from the stardust aerogel interstellar dust collector". Meteoritics and Planetary Science Supplement 73(5302), 2010. Link

--2009--

Westphal A.J., Allen C., Bajt S. et al. - "Stardust Interstellar Preliminary Examination (ISPE)". 40th NASA Lunar and Planetary Science Conference, 2009. Link

--2007--

Westphal A.J., Bastien R.K. et al. - "Search for Conteporary Interstellar Dust in the Stardust Collector". 38th NASA Lunar and Planetary Science Conference, 2007. Link

--2005--

Westphal A.J., Buttherworth A., Snead C.J. et al. - "Stardust@home: A Massively Distributed Public Search for Interstellar Dust in the Stardust Interstellar Dust Collector". 36th NASA Lunar and Planetary Science Conference, 2005. Link

The Cure

SU/UP

Good B.M., Loguercio S., Griffith O.L., Nanis M. et al. - "The Cure: Design and Evaluation of a Crowdsourcing Game for Gene Selection for Breast Cancer Survival Prediction". JMIR Serious Games 2(2), 2014. Link

The Dreamlab

Chrisochoidou Y, Roi R. et al. - "Crosstalk with lung fibroblasts shapes the growth and therapeutic response of mesothelioma cells". Cell Death Dis 14(725), 2023. Link

Southern J.,Gonzales G. et al. - "Genomic-driven nutritional interventions for radiotherapy-resistant rectal cancer patient". Sci Rep 13(14862), 2023.Link

Rita L., Neumann N.R. et al. - "Alzheimer’s disease: using gene/protein network machine learning for molecule discovery in olive oil". Hum Genomics 17(57), 2023. Link

Gonzalez G., Gong S. et al. - "Graph Attentional Autoencoder for Anticancer Hyperfood Prediction". Arxiv 2021. Link

Bonnal R.J.P., Rossetti G. et al. - "Clonally expanded EOMES+ Tr1-like cells in primary and metastatic tumors are associated with disease progression". Nature Immun 22(735-745), 2021. Link

Aksenov A.A., Laponogov I. et al. - "Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data". Nature Biotech 39(169-173), 2021. Link

Laponogov I., Gonzales G. et al. - "Network machine learning maps phytochemically-rich “Hyperfoods” to fight COVID-19". Human Genomics 15(1), 2021. Link

Veselkov K., Gonzales G. et al. - "HyperFoods: Machine intelligent mapping of cancer-beating molecules in foods". Nature Scientific Reports 9(9237), 2019. Link

Lee H., Lee J. et al. - "Mobile collaborative computing on the fly". Pervasive and Mobile Comp 58, 2019. Link

Pattnaik S., Vacher et al. - "Network-aware mutation clustering of cancer". Biorxiv 2018. Link

Van Doorn A. - "The Dream Lab". Lancet Oncology, 2016. Link

SU/UP

ZooUniverse

 GalaxyZoo + Cell Slider + SolarStorm Watch + Old Weather + Milky Way + Planet Hunter + Higgs Hunter + Cairo Geniza + Etch a Cell + About ZooUniverse

Progetti "GalaxyZoo/GalaxyZoo 2/GalaxyZoo Supernova/GalaxyZoo Hubble/RadioGalaxy Zoo/MoonZoo/Galaxy Nurseries"

2024 - 2023 - 2022 - 2021 - 2020 - 2019 - 2018 - 2017 - 2016 - 2015 - 2014 - 2013 - 2012 - 2011 - 2010 - 2009 - 2008

--2024--

Smith B.J., Watson M. et al. - "Grand Design versus Multiarmed Spiral Galaxies: Dependence on Galaxy Structure". The Astronom J 168(1), 2024. Link

Waghumbare A., Kasera S. et al. - "DIAT-DSCNN-ECA-Net: separable convolutional neural network-based classification of galaxy morphology". Astrophys Space Sci 369(38), 2024. Link

Keel W., Moiseev A. et al. - "The 2nd Galaxy Zoo search for distant EELRs around extant and fading AGN: 40 new Voorwerpjes". Bulletin of the American Astr Society 56(2), 2024. Link

Masters K.L., Gallway M. et al. - "Galaxy Zoo: Morphologies Based on UKIDSS NIR Imaging for 71,052 Galaxies". Res. Notes AAS 8(198), 2024. Link

Kameswara M., Fortson L. et al. - "Galaxy Zoo: Weird & Wonderful - Towards an effective human-machine collaborative anomaly detection framework". Bulletin of the American Astr Society 56(2), 2024. Link

Adrianomena S., Tang H. - "Radio Galaxy Zoo: Leveraging latent space representations from variational autoencoder". J of Cosmology and Astropart Phys 2024, 2024. Link

Slikepcevic I., Scaife A.M. et al. - "Radio galaxy zoo: towards building the first multipurpose foundation model for radio astronomy with self-supervised learning". RAS Techniques and Instruments 3(1), 2024. Link

Garland I.L., Walmsley M. et al. - "Galaxy Zoo DESI: large-scale bars as a secular mechanism for triggering AGNs". Monthly Not. of the Royal Astron. Soc. 532(2), 2024. Link

--2023--

Bowles M., Tang H. et al. - "Radio galaxy zoo EMU: towards a semantic radio galaxy morphology taxonomy". Monthly Not. of the Royal Astron. Soc. 522(2), 2023. Link

Porter L.E., Holwerda B.W. et al - "The loneliest galaxies in the Universe: a GAMA and Galaxy Zoo study on void galaxy morphology". Monthly Not. of the Royal Astron. Soc. 524(4), 2023. Link

Chen D., Kerai V. et al. - "Radio Galaxy Zoo: Tagging radio subjects using text". Publ of Astronom Society of Australia 40, 2023. Link

Geron T., Lintott C. et al. - "Galaxy Zoo: kinematics of strongly and weakly barred galaxies". Monthly Not. of the Royal Astron. Soc. 521(2), 2023. Link

Walmsley M.,Geron T. et al. - "Galaxy Zoo DESI: Detailed morphology measurements for 8.7M galaxies in the DESI Legacy Imaging Surveys". Monthly Not. of the Royal Astron. Soc. 526(3), 2023. Link

--2022--

Slijpievic Inigo V., Scaife A. M. M. et al. - "Radio Galaxy Zoo: using semi-supervised learning to leverage large unlabelled data sets for radio galaxy classification under data set shift". Monthly Not. of the Royal Astron. Soc. 514(2), 2022. Link

Porter-Temple R., Holwerda B.W. et al. - "Galaxy And Mass Assembly: Galaxy Zoo spiral arms and star formation rates". Monthly Not. of the Royal Astron. Soc. 515(3), 2022. Link

Porter L.R. - "The loneliest galaxies in the Universe: a Gama and galaxy zoo study on void galaxy morphology". Phd Thesis, 2022. Link

Vavilova I.B., Khramtsov V. et al. - "VizieR Online Data Catalog: Galaxies at 0.02<z<0.1 morphological catalog". Space Science & Technology 28(1), 2022. Link

Wei S., Li Y. et al. - "Unsupervised Galaxy Morphological Visual Representation with Deep Contrastive Learning". Astron Soc of Pacific 134(1041), 2022. Link

Hall X., Miller A. - "Using the Zooniverse to Produce a Catalog of 277 Type II SNe from the Bright Transient Survey". AAS Bulletin 54(6), 2022. Link

Masters K.L., Todd A. et al. - "Galaxy Zoo: 3D – crowdsourced bar, spiral, and foreground star masks for MaNGA target galaxies". Monthly Not. of the Royal Astron. Soc. 507(3), 2022. Link

Keel C.W., Tate J. et al. - "Gems of the Galaxy Zoos—A Wide-ranging Hubble Space Telescope Gap-filler Program". The Astroph J 163(4), 2022. Link

Adams D., Metha V. et al. - "Galaxy Zoo: Clump Scout: Surveying the Local Universe for Giant Star-forming Clumps". The Astroph J 931(1), 2022. Link

Smethurs R.J., Masters K.L. et al. - "Quantifying the poor purity and completeness of morphological samples selected by galaxy colour". Monthly Not. of the Royal Astron. Soc. 510(3), 2022. Link

Hayat A., Stein G. et al. - "Self-Supervised Representation Learning for Astronomical Images". The Astroph J Letters 911(2), 2022. Link

Walmsey M., Scaife A.M.M. - "Practical Galaxy Morphology Tools from Deep Supervised Representation Learning". Monthly Not. of the Royal Astron. Soc. 513(2), 2022. Link

Gupta R., Desai S. et al. - "Galaxy morphology classification using neural ordinary differential equations". Astron and Comput 38, 2022. Link

Tang H., Scaife A.M.M. et al. - "Radio Galaxy Zoo: giant radio galaxy classification using multidomain deep learning". Monthly Not. of the Royal Astron. Soc. 510(3), 2022. Link

--2021--

Masters K.L., Lintott C. et al. - "Galaxy Zoo 3D: Crowdsourcing the identification of internal structure and foreground stars in MaNGA bundles". Bulletin of the AAS 53(1), 2021. Link

Metha V., Scarlata C. et al. - "Investigating Clumpy Galaxies in SDSS Stripe82 using Galaxy Zoo". The Astroph J 912 (1), 2021. Link

Wamsley M., Lintott C. et al. - "Galaxy Zoo DECaLS: Detailed visual morphology measurements from volunteers and deep learning for 314 000 galaxies". Monthly Not. of the Royal Astron. Soc. 509(3), 2021. Link

Geron T., Smethurst R.J. et al. - "Galaxy zoo: stronger bars facilitate quenching in star-forming galaxies". Monthly Not. of the Royal Astron. Soc. 507(3), 2021. Link

Lingard T., Masters K.L. et al. - "Galaxy zoo builder: Morphological dependence of spiral galaxy pitch angle". Monthly Not. of the Royal Astron. Soc. 504(3), 2021. Link

Sarkar S., Pandey B. et al. - "Do galactic bars depend on environment?: an information theoretic analysis of Galaxy Zoo 2". Monthly Not. of the Royal Astron. Soc. 501 (1), 2021. Link

Shamshi S.J., Masters K.L. et al. - "Tracing Star Formation in Spirals with Galaxy Zoo: 3D". Bulletin of the AAS 53(1), 2021.
https://ui.adsabs.harvard.edu/abs/2021AAS...23735107S/abstract

Smith D.M., Holwerda B.W. - "Transformations of Galaxies in the Green Valley According to the Galaxy Zoo Voting". Bulletin of the AAS 53(1), 2021. Link

--2020--

Cheng T-Y., Conselice T.J et al. - "Optimising Automatic Morphological Classification of Galaxies with Machine Learning and Deep Learning using Dark Energy Survey Imaging". Monthly Not. of the Royal Astron. Soc. 493 (3), 2020. Link

Lingard T.K., Masters K.L. et al. - "Galaxy Zoo Builder: Four-component Photometric Decomposition of Spiral Galaxies Guided by Citizen Science". The Astroph Jour 900(2), 2020. Link

Kosiba M., Lieu M. et al. - "Multiwave length classification of X-ray selected galaxy cluster candidates using convolutional neural networks". Monthly Not. of the Royal Astron. Soc. 496(4), 2020. Link

Fulton M., Smith K.W. et al. - "Supernova Hunters Discovery of 24 Optical Transients with Pan-STARRS". Transient Name Server AstroNote 255, 2020. Link

Tang H., Scaife A.M.M. et al. - "Radio Galaxy Zoo: new giant radio galaxies in the RGZ DR1 catalogue". Monthly Not. of the Royal Astron. Soc. 499(1), 2020. Link

Wainer T., Johnson L. et al. - "Search for Local Group Clusters: M33 Survey Data". Americ Astron Soc Meeting #235, 2020. Link

Variawa M.Z., Woolway M. et al. - "A rules-based and Transfer Learning approach for deriving the Hubble type of a galaxy from the Galaxy Zoo data". 23th Intern Conf on Inform Fusion, 2020. Link

Variawa M.Z., Woolway M. et al. - "Comparing Generalisation Using Crowd-Sourced vs Expert Labels for Galaxies Classification". 7th Int Conf on Soft Comp & Machine Intellig (ISCMI), 2020. Link

Thiemann H. - "Red Giant Binary Stars. A new discovery?". The Open University, 2020. Link

Thiemann H., Norton A.J. - "Investigation of the rotation-activity relation for a sample of SuperWASP and ASAS-SN field stars". Publications of the Astronom Soc of Australia (PASA), 2020. Link

Martin G., Kaviraj S. et al. - "Galaxy morphological classification in deep-wide surveys via unsupervised machine learning". Monthly Not. of the Royal Astron. Soc. 491(1), 2020. Link

Barchi P.H., Sautter R.A. et al. - "Machine and Deep Learning applied to galaxy morphology - A comparative study". Astronomy and Computer 30, 2020. Link

Wamsley M., Lintott C.J. et al. - "Galaxy Zoo: Probabilistic Morphology through Bayesian CNNs and Active Learning". Monthly Not. of the Royal Astron. Soc. 491(2), 2020. Link

--2019--

Easton N., Miller A. et al. - "Variable star classification with crowd sourcing". AAS Meeting 233, 2019. Link

Masters K, Galaxy Zoo Team - "Twelve Years of Galaxy Zoo". Proceedings of Galac Dinam in Era of Large Survey 353, 2019. Link

Raddick M.J., Wallace C.S. et al. - "Galaxy zoo: Science content knowledge of citizen scientists". Public Understandig of Science 28(6), 2019. Link

Masters K. - "Galaxy Morphology from Galaxy Zoo". AAS Meeting 233, 2019. Link

Galvin T.J., Norris R.P. et al. - "Radio Galaxy Zoo: Unsupervised Clustering of Convolutionally Auto-encoded Radio-astronomical Images". Public of Astron Society of Pacific 131(1004), 2019. Link

Ralph N.O., Norris R.P. et al. - "Radio Galaxy Zoo: Knowledge Transfer Using Rotationally Invariant Self-Organising Maps". Public of Astron Society of Pacific 131(1004), 2019. Link

Simmons B., Lintott C.J. et al. - "The growth of bars from 0.25 < z < 1: analysis of galactic bar lengths and strengths with Galaxy Zoo: Bar Lengths". AAS Meeting 233, 2019. Link

Davis T.A., Young L.M. - "Gas accretion as fuel for residual star formation in Galaxy Zoo elliptical galaxies". Monthly Not. of the Royal Astron. Soc. 489(1), 2019. Link

Master K.L., Lintott C.J. et al. - "Galaxy Zoo: unwinding the winding problem – observations of spiral bulge prominence and arm pitch angles suggest local spiral galaxies are winding". Monthly Not. of the Royal Astron. Soc. 487(2), 2019. Link

Garon A.F., Rudnick L. et al. - "Radio Galaxy Zoo: The Distortion of Radio Galaxies by Galaxy Clusters". The Astron Jour 157(3), 2019. Link

Jimenez M., Triguero I. et al. - "A Preliminary Approach for the Exploitation of Citizen Science Data for Fast and Robust Fuzzy k-Nearest Neighbour Classification". IEEE Intern Confer on Fuzzy Logic, 2019. Link

Holwerda B.W., Lintott C. et al. - "The Frequency of Dust Lanes in Edge-on Spiral Galaxies Identified by Galaxy Zoo in KiDS Imaging of GAMA Targets". The Astron Jour 158(3), 2019. Link

Rasheed M.A., Mohammad K.K. - "Morphological Distribution of Galaxies in Some Nearby Clusters". Open Astronomy 28(1), 2019. Link

Zhu X-P, Dai J-M. et al. - "Galaxy morphology classification with deep convolutional neural networks".Astroph and Space Science 364(55), 2019. Link

Krolewki A., Ho S. et al. - "Alignment between filaments and galaxy spins from the MaNGA integral-field survey". The Astrophy J. 876(1), 2019. Link

Walmsley M., Smith L. et al. - "Galaxy Zoo: Probabilistic Morphology through Bayesian CNNs and Active Learning". Monthly Not. of the Royal Astron. Soc. 491(2), 2019. Link

Dickinson H., Fortson L. et al. - "Modeling with the Crowd: Optimizing the Human-Machine Partnership with Zooniverse". Proc of Int Aston Union, 2019. Link

Lintott C., Walmsley M. - "Robots and Citizens: A Galaxy Zoo view of Machine Learning". AAS Meeting 233, 2019. Link

Garon A.F., Rudnick L. et al. - "Radio Galaxy Zoo: The Distortion of Radio Galaxies by Galaxy Clusters". The Astron J. 157(3), 2019. Link

Simmons B., Masters K. et al. - "The growth of bars from 0.25 < z < 1: analysis of galactic bar lengths and strengths with Galaxy Zoo: Bar Lengths". AAS Meeting 233, 2019. Link

Masters K. - "Galaxy Morphology from Galaxy Zoo". AAS Meeting 233, 2019. Link

--2018--

Chong K., Yang A. - "Photometric Redshift Analysis using Supervised Learning Algorithms and Deep Learning". ISMD 2018. Link

Norton A.J. - "A Zooniverse Project to Classify Periodic VariableStars from SuperWASP". AAS 2(4), 2018. Link

Cao Y., Chen L. - "Convolutional Neural Networks for Galaxy Zoo Challenge of Morphological Class Probablity Regression". 2018. Link

Katebi R., Zhou Y. et al. - "Galaxy morphology prediction using capsule networks". Monthly Not. of the Royal Astron. Soc., 2018. Link

Hart R.E., Bamford S.P. et al. - "Galaxy Zoo: constraining the origin of spiral arms". Monthly Not. of the Royal Astron. Soc. 478(1), 2018. Link

Wu C., Wong I. et al. - "Radio Galaxy Zoo: ClaRAN - A Deep Learning Classifier for Radio Morphologies". Monthly Not. of the Royal Astron. Soc. 2018. Link

Lukic V., Bruggen M. et al. - "Radio Galaxy Zoo: compact and extended radio source classification with deep learning". Monthly Not. of the Royal Astron. Soc. 476(1), 2018. Link

Jesse C.S., Lintott C.J. et al. - "Galaxy Zoo: Infrared and Optical Morphology". AAS Meeting 231, 2018. Link

Dickinson C., Lintott C.J. et al. - "Galaxy Zoo: Comparing the visual morphology of synthetic galaxies from the Illustris simulation with those in the real Universe". AAS Meeting 231, 2018. Link

Cardamone C., Cappelluti N. et al. - "Environments of z~0.2 Star Forming Galaxies: Building on the Citizen Science Discovery of the Green Peas". AAS Meeting 231, 2018. Link

Norton A. - "A Zooniverse project to classify periodic variable stars from SuperWASP". British Astronom Assoc Variable Stars Workshop 177, 2018. Link

Dickinson H., Scarlata C. et al. - "Galaxy Nurseries: Crowdsourced Analysis of Slitless Spectroscopic Data". Research Notes of AAS 2(3), 2018. Link

Crowe C., Lundgren B. et al. - "Crowdsourcing Broad Absorption Line Properties and Other Features of Quasar Outflow Using Zooniverse Citizen Science Project Platform". AAS Meeting 231, 2018. Link

Fortson L., Darryl W. et al. - "Zooniverse: Combining Human and Machine Classifiers for the Big Survey Era". AAS Bulletin, 2018. Link

Dickinson H., Fortson L. et al. - "Galaxy Zoo: Morphological classification of galaxy images from the Illustris Simulation". The Astrophysical Journal 853(194), 2018. Link

Kruk S.J., Lintott C.J. et al. - "Galaxy Zoo: Secular evolution of barred galaxies from structural decomposition of multi-band images". Monthly Not. of the Royal Astron. Soc. 473(4), 2018. Link

--2017--

Hart R.E., Bamford S.P. et al. - "VizieR Online Data Catalog: Galaxy Zoo 2: new classification". Monthly Not. of the Royal Astron. Soc. 461, 2017. Link

Buta R.J. - "Galactic rings revisited – I. CVRHS classifications of 3962 ringed galaxies from the Galaxy Zoo 2 Database". Monthly Not. of the Royal Astron. Soc. 471(4), 2017. Link

Contigiani O., De Gasperin F. et al. - "Radio Galaxy Zoo: Cosmological Alignment of Radio Sources". Monthly Not. of the Royal Astron. Soc. 472 (1), 2017. Link

Hart R.E., Bamford S.P. et al. - "Galaxy Zoo and Sparcfire: constraints on spiral arm formation mechanisms from spiral arm number and pitch angles". Monthly Not. of the Royal Astron. Soc. 472(2), 2017. Link

Smethurst R.J., Lintott C.J. et al. - "Galaxy Zoo: the interplay of quenching mechanisms in the group environment". Monthly Not. of the Royal Astron. Soc. 469(3), 2017. Link

Zevin M., Coughlin S. et al. - "Gravity Spy:  Integrating Advanced LIGO Detector Characterization, Machine Learning, and Citizen Science". Class Quantum Grav 34, 2017. Link

Willet K.W., Galloway M.A. et al. - "Galaxy Zoo: Morphological Classification for 120,000 Galaxies in HST Legacy Imaging". Monthly Not. of the Royal Astron. Soc. 464(4), 2017. Link

Kapinska A.D., Terentev I. et al. - "Radio Galaxy Zoo: A search for hybrid morphology radio galaxies". The Astronomical Journal 154(6), 2017. Link

Weigel A.K., Schawinski K. et al. - "Galaxy Zoo: Major Galaxy Mergers Are Not a Significant Quenching Pathway". The Astrophysical Journal 845(2), 2017. Link

Kruk S.J., Lintott C.J. et al. - "Galaxy Zoo: finding offset discs and bars in SDSS galaxies". Monthly Not. of the Royal Astron. Soc. 469(3), 2017. Link

--2016--

Kunchner M.J., Silverberg S.M. et al. - "Disk Detective:  Discovery of New Circumstellar Disk Candidates through Citizen Science". Astrophy Jour 830(2), 2016. Link

Honghui S. - "Classification of Galaxies using Convolutional Neural Networks (CNN)". Master of Science in Electrical and Computer Engineering, 2016. Link

Straub M.C.P. - "Giving Citizen Scientists a Chance: A Study of Volunteer-led Scientific Discovery". Citiz Science Theory and Practice 1(1), 2016. Link

Simmons D.B., Lintott C. et al. - "Galaxy Zoo: Quantitative Visual Morphological Classifications for 48,000 galaxies from CANDELS". Monthly Not. of the Royal Astron. Soc., 2016. Link

Banfield J.K., Andernach H., Kapinska A.D. et al. - "Radio Galaxy Zoo: discovery of a poor cluster through a giant wide-angle tail radio galaxy". Monthly Not. of the Royal Astron. Soc. 460, 2016. Link

Holincheck A.J., "Galaxy Zoo: Mergers - Dynamical Models of Interacting Galaxies". Monthly Not. of the Royal Astron. Soc. 2016. Link

Master K., Younh Ho e., Cox J. et al. -  "Science Learning via Participation in Online Citizen Science". J of Science Commun, 2016. Link

Cox J., Younh Ho e. et al. - "How is success defined and measured in online citizen science?  A case study of Zooniverse projects". Comput in Science and Engineering 17(4), 2016. Link

Bugiolacchi R., Bamfort S., Tar P. et al - "The Moon Zoo citizen science project: Preliminary results for the Apollo 17 landing site". Icarus 01.021, 2016. Link

--2015--

More A., Verma A., Marshall P.J. et al. - "Space Warps: II. New Gravitational Lens Candidates from the CFHTLS Discovered through Citizen Science". Monthly Not. of the Royal Astron. Soc. 455(2), 2015. Link

Geach J.E., More A. - "The Red Radio Ring: a gravitationally lensed hyperluminous infrared radio galaxy at z=2.553 discovered through citizen science". Monthly Not. of the Royal Astron. Soc. 452(1), 2015. Link

Kung R., Saha P. et al. - "Gravitational Lens Modelling in a Citizen Science Context". Monthly Not. of the Royal Astron. Soc. 447, 2015. Link

Campbell A., Cartier R. et al. - "PESSTO spectroscopic classification of optical transients". The Astronomer's Telegram 7261, 2015. Link

Banfield J.K., Wong O.I.. Willett K.W. et al. - "Radio Galaxy Zoo: host galaxies and radio morphologies derived from visual inspection". Monthly Not. of the Royal Astron. Soc. 453(3), 2015. Link

Dieleman S., Willett K.W., Dambre J. - "Rotation-invariant convolutional neural networks for galaxy morphology prediction". Monthly Not. of the Royal Astron. Soc. 450(2), 2015. Link

Willett K.W., Schawinski K., Simmons B.D. et al. - "Galaxy Zoo: the dependence of the star formation-stellar mass relation on spiral disk morphology". Monthly Not. of the Royal Astron. Soc. 499(1), 2015. Link

Smethurst R.J., Lintott C.J., Simmons B.D. et al. - "Galaxy Zoo: Evidence for Diverse Star Formation Histories through the Green Valley". Monthly Not. of the Royal Astron. Soc. 450(1), 2015. Link

Galloway M.A., Willet K.W., Fortson L.F. et al. - "Galaxy Zoo: the effect of bar-driven fueling on the presence of an active galactic nucleus in disc galaxies". Monthly Not. of the Royal Astron. Soc. 448(4), 2015. Link

Clifton Johnson L., Seth A.C., Dalcanton J.J. et al. - "Phat stellar cluster survey II. Andromeda project cluster catalog". The Astrophys Jour 802(2), 2015. Link

--2014--

Keel W.C., Manning A.M., Holwerda B.W. et al. - "Galaxy Zoo: The Ultraviolet Attenuation Law in Backlit Spiral Galaxies". The Astronomical Jour. 147(2), 2014. Link

Simmons B.D., Melvin T., Lintott C. et al. - "Galaxy Zoo: CANDELS Barred Disks and Bar Fractions". Monthly Not. of the Royal Astron. Soc. 445(4), 2014. Link

Marshall P.J., Lintott C. et al. - "Ideas for Citizen Science in Astronomy".Annual Review of Astron and Astroph 53, 2014. Link

Cheung E., Trump J.R., Athanassoula E. et al. - "Galaxy Zoo: Are Bars Responsible for the Feeding of Active Galactic Nuclei at 0.2< z <1.0?". Monthly Not. of the Royal Astron. Soc. 447(1), 2014. Link

Cox J., Younh Ho e. et al. - "Playing with science: Gamised aspects of gamification found on the online citizen science project – Zooniverse". GameON Conference, 2014. Link

Ponciano L., Brasileiro F. - "Finding Volunteers’ Engagement Profiles in Human Computation for Citizen Science Projects". Human Computation 1(2), 2014. Link

Schawinski K., Urry C.M., Simmons B., Fortson L. et al. - "The Green Valley is a Red Herring: Galaxy Zoo reveals two evolutionary pathways towards quenching of star formation in early- and late-type galaxies". Monthly Not. of the Royal Astron. Soc., 2014. Link

Melvin T., Masters K.L., Lintott C. et al. - "Galaxy Zoo: An independent look at the evolution of the bar fraction over the last eight billion years from HST-COSMOS".  Monthly Not. of the Royal Astron. Soc. 438(4), 2014. Link

Kuminski E., George J. et al. - "Combining human and machine learning for morphological analysis of galaxy images". Astronomical Society of the Pacific 126(944), 2014. Link

Madison M.J. - "Commons at the Intersection of Peer Production, Citizen Science, and Big Data: Galaxy Zoo". Governing Knowledge Commons Oxford University Press, 2014. Link

--2013--

Cheung E., Athanassoula E., Masters K.L. et al. - "Galaxy Zoo: Observing Secular Evolution Through Bars". Astrophys Jour. 779(2), 2013. Link

Willett K.W., Lintott C.J., Bamford S.P. et al. - "Galaxy Zoo 2: detailed morphological classifications for 304,122 galaxies from the Sloan Digital Sky Survey". Monthly Not. of the Royal Astron. Soc. 435(4), 2013. Link

Rodriguez S., Padilla N.D. - "The Intrinsic Shape of Galaxies in SDSS/Galaxy Zoo". Monthly Not. of the Royal Astron. Soc. 434(3), 2013. Link

Tojero R., Masters K.L., Richards J., Percival W.J et al. - "The different star-formation histories of blue and red spiral and elliptical galaxies". Monthly Not. of the Royal Astron. Soc. 432(1), 2013. Link

Lintott C.J., Masters K.L., Brooke S. et al. - "Morphology in the Era of Large Surveys". Astronomy&Geophysics 54(5), 2013. Link

Masters K.L. - "A Zoo of Galaxies". Highlights of Astronomy 16, 2013. Link

Raddick M.J., Bracey G., Gay P.L., Lintott C.J. et al. - "Galaxy Zoo: Motivations of Citizen Scientists". Astronomy Education Review 12, 2013. Link

Keel W.C., Manning A., Holwerda B.W. et al. - "Galaxy Zoo: A Catalog of Overlapping Galaxy Pairs for Dust Studies". Publ. Astron. Soc. Pac. 125, 2013. Link

--2012--

Levitan D., Kupfer T., Groot P.J. et al. - "Five new outbursting AM CVn systems discovered by the Palomar Transient Factory". Monthly Not. of the Royal Astron. Soc. 430(2), 2012. Link

Casteels K.R.V, Bamford S.P., Skibba R.A et al. - "Galaxy Zoo: quantifying morphological indicators of galaxy interaction". Monthly Not. of the Royal Astron. Soc. 429(2), 2012. Link

Maguire K., Sullivan M. et al. - "Hubble Space Telescope studies of low-redshift Type Ia supernovae: evolution with redshift and ultraviolet spectral trends". Monthly Not. of the Royal Astron. Soc. 426(3), 2012. Link

Masters K.L., Nichol R.C., Haynes M.P et al. - "Galaxy Zoo and ALFALFA: atomic gas and the regulation of star formation in barred disc galaxies". Monthly Not. of the Royal Astron. Soc. 424(3), 2012. Link

Skibba R.A., Masters K.L., Nichol R.C., et al. - "Galaxy Zoo: the environmental dependence of bars and bulges in disc galaxies". Monthly Not. of the Royal Astron. Soc. 423(49), 2012. Link

Kaviraj S., Ting Y-S., Bureau M. et al. - "Galaxy Zoo: Dust and molecular gas in early-type galaxies with prominent dust lanes", Monthly Not. of the Royal Astron Soc 423(49), 2012. Link

Shabala S.S., Ting Y-S., Kaviraj S. et al. - "Galaxy Zoo: Dust lane early-type galaxies are tracers of recent, gas-rich minor mergers", Monthly Not. of the Royal Astron. Soc. 423(49), 2012. Link

Hoyle B., Masters K.L., Nichol R.C et al. - "The fraction of early-type galaxies in low-redshift groups and clusters of galaxies". Monthly Not. of the Royal Astron. Soc. 423(4), 2012. Link

Finkelman I., Funes J.G., Brosch N. - "Polar ring galaxies in the Galaxy Zoo". Monthly Not. of the Royal Astron. Soc. 422(3), 2012. Link

Carpineti A., Kaviraj S., Darg D., Lintott C.J. et al. - "Spheroidal post-mergers in the local Universe". Monthly Not. of the Royal Astron. Soc. 420(3), 2012. Link

Wong O.I., Schawinski K., Kaviraj S. et al. - "Galaxy Zoo: building the low-mass end of the red sequence with local post-starburst galaxies". Monthly Not. of the Royal Astron. Soc. 420(2), 2012. Link

Keel W.C., Chojnowski S.D., Bennert - "The Galaxy Zoo survey for giant AGN-ionized clouds: past and present black hole accretion events". Monthly Not. of the Royal Astron. Soc. 420(1), 2012. Link

Simpson E., Roberts S., Psorakis I. et al. - "Dynamic Bayesian Combination of Multiple Imperfect Classifiers". Decision Making and Imperfection Book, 2012. Link

Teng S.H., Schawinski K., Urry C.M., Darg D.W. et al. - "Chandra Observations of Galaxy Zoo Mergers: Frequency of Binary Active Nuclei in Massive Mergers". Astrophys Jour. 753(2), 2012. Link

--2011--

Clery D. - "Galaxy Zoo Volunteers Share Pain and Glory of Research". Science 333(6039), 2011. Link

Kaviraj S., Darg D., Lintott C., et al. - "Tidal dwarf galaxies in the nearby Universe". Monthly Not. of the Royal Astron. Soc. 419(1), 2011. Link

Maguire K., Sullivan M. et al. - "PTF10ops - a subluminous, normal-width light curve Type Ia supernova in the middle of nowhere". Monthly Not. of the Royal Astron. Soc. 418(2), 2011. Link

Way M.J. - "Galaxy Zoo Morphology and Photometric Redshifts in the Sloan Digital Sky Survey". The Astrophys. Jour. Lett. 734(1), 2011. Link

Hoyle B., Masters K.L., Nichol R.C et al., - "Galaxy Zoo : Bar Lengths in Nearby Disk Galaxies", Monthly Not. of the Royal Astron. Soc. 415, 2011. Link

Masters K.L., Nichol R.C, Hoyle B. et al. - "Galaxy Zoo: bars in disk galaxies". Monthly Not. of the Royal Astron. Soc. 411(3), 2011. Link

Lintott C., Schawinski K., Bamford S. et al. - "Galaxy Zoo 1 : Data Release of Morphological Classifications for nearly 900,000 galaxies", Monthly Not. of the Royal Astron. Soc. 410(1), 2011. Link

Robbins S.J., Chapman C.R., Gay P.L. - "Moon Zoo: Lessons learned from the first year of citizen scientists identifying Lunar Craters". 2nd Planetary Crater Consortium, 2011. Link

Gay P.L., Brown S., Huang D. et al. - "Moon Zoo: Making the public part of a crater survey algorithm". EPSC-DPS Joint Meeting, 2011. Link

Joy K., Cramford I., Grindod P. et al. - "Moon Zoo: A Citizen Science in Lunar Exploration." Astronomy & Geophysics 52(2), 2011.
Link

Smith A. M, Linn S., Sullivan M. et al., 2011, "Galaxy Zoo Supernovae", Monthly Not. of the Royal Astron. Soc., 412(1309), 2011. Link

--2010--

Darg D. W., Kaviraj S., Lintott C.J. et al., "Galaxy Zoo: Multi-Mergers and the Millennium Simulation", Monthly Not. of the Royal Astron. Soc. 416(1745), 2010. Link

Banerji M., Lahav O., Lintott C.J. et al. - "Galaxy Zoo: Reproducing galaxy morphologies via machine learning". Monthly Not. of the Royal Astron. Soc. 406(1), 2010. Link

Masters K.L., Mosleh M., Romer A.K. et al. - "Galaxy Zoo: passive red spirals", Monthly Not. of the Royal Astron. Soc. 405(2), 2010. Link

Masters K.L., Nichol R., Bamford S. et al. - "Galaxy Zoo: dust in spiral galaxies", Monthly Not. of the Royal Astron. Soc. 404(2), 2010. Link

Schawinski K., Evans D.A., Virani S. et al. - "The Sudden Death of the Nearest Quasar", The Astrophys. Jour. Lett. 724(1), 2010. Link

Schawinski K., Urry C.M., Virani S. et al. - "Galaxy Zoo: The Fundamentally Different Co-Evolution of Supermassive Black Holes and Their Early- and Late-Type Host Galaxies". The Astrophys. Jour. Lett. 711(1), 2010. Link

Jimenez R., Slosar A., Verde L. et al. - "Galaxy Zoo: a correlation between the coherence of galaxy spin chirality and star formation efficiency". Monthly Not. of the Royal Astron. Soc. 404(2), 2010. Link

Raddick J.M., Bracey G., Gay P.L. et al. - "Galaxy Zoo: Exploring the Motivations of Citizen Science Volunteers". Astronomy Education Review 9(1), 2010. Link

Darg D. W., Kaviraj S., Lintott C.J. et al. - "Galaxy Zoo: The properties of merging galaxies in the nearby Universe - local environments, colours, masses, star-formation rates and AGN activity". Monthly Not. of the Royal Astron. Soc. 401(3), 2010. Link

--2009--

Darg D., Kaviraj S., Lintott C.J. et al. - "Galaxy Zoo: the fraction of merging galaxies in the SDSS and their morphologies". Monthly Not. of the Royal Astron. Soc. 401(2), 2009. Link

Cardamone C., Schawinski K., Sarzi M. et al. - "Galaxy Zoo Green Peas: Discovery of A Class of Compact Extremely Star-Forming Galaxies". Monthly Not. of the Royal Astron. Soc., 399(2), 2009. Link

Skibba R.A., et al. - "Galaxy Zoo: disentangling the environmental dependence of morphology and colour". Monthly Not. of the Royal Astron. Soc., 399(2), 2009. Link

Lintott C.J., Schawinski K., Keel W. et al. - "Galaxy Zoo: 'Hanny's Voorwerp', a quasar light echo?". Monthly Not. of the Royal Astron. Soc. 399(1), 2009. Link

Schawinski K., Lintott C., Thomas D. et al. - "Galaxy Zoo : A sample of blue early-type galaxies at low redshift". Monthly Not. of the Royal Astron. Soc. 396(2), 2009. Link

Bamford S.P., Nichol R.C., Baldry I.K. et al. - "Galaxy Zoo: the dependence of morphology and colour on environment". Monthly Not. of the Royal Astron. Soc. 393(4), 2009. Link

Slosar A., Land K., Bamfort S. et al. - "Galaxy Zoo: Chiral correlation function of galaxy spins". Monthly Not. of the Royal Astron. Soc. 392(3), 2009. Link

--2008--

Lintott C.J., Schawinski K., Slosar A. et al. - "Galaxy Zoo: Morphologies derived from visual inspection of galaxies from the Sloan Digital Sky Survey". Monthly Not. of the Royal Astron. Soc. 389(3), 2008. Link

Land K., Slosar A., Lintott C.J. et al. - "Galaxy Zoo: The large-scale spin statistics of spiral galaxies in the Sloan Digital Sky Survey". Monthly Not. of the Royal Astron. Soc. 388(4), 2008. Link

Progetto "Cell Slider"

Hodgkinson I.A., Mousavi S. et al. - "New development: Citizen science—discovering (new) solutions to wicked problems". Public Money&Management 42(2), 2021. Link

Dicker S. - "Technoscientific Citizenship in Citizen Science. Assembling Crowds for Biomedical Research". TechnoScienceSociety 30, 2020. Link

Smittenaar P., Walker A.K. et al. - "Harnessing citizen science through mobile phone technology to screen for immunohistochemical biomarkers in bladder cancer". British J of cancer 119, 2018. Link

Rotaru D.C., Baltasar F.M. et al. - "Developing gamified interactive content for medicaltraining in cytopathology". 1st Worksh on gamification and games for science, 2017. Link

Candido do Reis F.J., Lynn S. et al. - "Crowdsourcing the General Public for Large Scale Molecular Pathology Studies in Cancer". Ebiomedicine 2, 2015. Link

Pharoah P. - "Contributing to Cancer research with Cell Slider". American Association for the Advancement of Science, 2014. Link

Progetto "SolarStorm Watch"

James L.A., Scott C.J. et al. - "Sensitivity of Model Estimates of CME Propagation and Arrival Time to Inner Boundary Conditions". Space Weather 21(4), 2022. Link

Jones S.R., Scott C.J. et al. - "The Visual Complexity of Coronal Mass Ejections Follows the Solar Cycle". Space Weather 18(10), 2020. Link

Scott C., Bernard L. et al. - "Researching solar storms with citizen scientists: engaging with four thousand volunteer research assistants". Open Research Case Study, University of Reading 2019. Link

Bernard L., Scott C. et al. - "Differences between the CME fronts tracked by an expert, an automated algorithm, and the Solar Stormwatch project". Space Wheater 13(10), 2015. Link

Tucker-Hood K., Scott C. et al. - "Validation of a priori CME arrival predictions made using real-time heliospheric imager observations". Space Wheater 13(1), 2015. Link

Bernard L., Scott C. et al. - "The Solar Stormwatch CME catalogue: Results from the first space weather citizen science project". Space Wheater 12(12), 2014. Link 

Davis C.J., Davies J.A. et al. - "The distribution of interplanetary dust between 0.96 and 1.04 AU as inferred from impacts on the STEREO spacecraft observed by the Heliospheric Imagers". Monthly Not. of the Royal Astron. Soc. 420(2), 2012. Link

Savani N.P., Davies J.A., Davis C.J. et al. - "Observational Tracking of the 2D Structure of Coronal Mass Ejections Between the Sun and 1 AU". Solar Physics 279(2), 2012. Link

Progetto "Milky Way"

Devine K., Wolf-Chase G. et al. - "Leveraging a Milky Way Project Discovery to Bridge Our Understanding of Low- and High-Mass Star Formation: Student Involvement via The PERYSCOPE Project". Bulletin of the American Astron Society 56(7), 2024. Link

Wisnant A., Povich M.S. - "The Milky Way Project MOBStIRS: Parameterizing Infrared Bow Shock Morphologies with Citizen Science". Bulletin of the American Astr Society 55(2), 2023. Link

Simcoe R. - "NEOWISE As A Transient Discovery Machine: Revealing The Enshrouded Births, Deaths And Afterlives Of Stars Through Cosmic Time". NASA Astrophysics Data Analysis, 2023. Link

Wisnant A., Povich M.S. et al. - "The Milky Way Project: MOBStIRS (Mass-loss rates of OB Stars from IR bow Shocks)". Pomona Calif State University Undergrad Project, 2022. Link

Thevenot M., Cornen C. et al. - "Galaxies in the Zone of Avoidance with the Spitzer Space Telescope". Research Notes of AAS 4(9), 2020. Link

Wu Y, Abbott K. - "Aperture Photometry and Distance Determination of Star-Forming Regions in the Milky Way". 5th Annual Creat Activ&Research Symp, 2020. Link

Jayasinghe T., Dixon D. et al. - "The Milky Way Project second data release: bubbles and bow shocks". Monthly Not. of the Royal Astron. Soc. 488(1), 2019. Link

Wolf-Chase G.A., Kerton C.R. et al. - "The Milky Way Project: Probing Star Formation with a New Yellowball Catalog". Bull of the Amer Astr Society 51(4), 2019. Link

Dixon D., Jayasinghe T. et al. - "The Milky Way Project: A Citizen Science Catalog of Infrared Bow Shock Nebulae". AAS Meeting 229, 2017. Link

Kendrew S., Beuther H. et al. - "The Milky Way Project and ATLASGAL: The distribution and physical properties of cold clumps near infrared bubbles". Astrophys J, 2016. Link

Kerton C.R., Wolf-Chase G., Lintott C.J. et al. - "The Milky Way Project: What are Yellowballs?". Astrophys Jour. 799(153), 2015. Link

Beaumont C., Goodman A. et al. - "The Milky Way Project: Leveraging Citizen Science and Machine Learning to Detect Interstellar Bubbles". Astrophys J, 2014. Link

Kendrew S., Simpson R.J., Bressert E. et al. - "The Milky Way Project: A Statistical Study of Massive Star Formation Associated with Infrared Bubbles". Astrophys J. 775(1), 2012. Link

Simpson R.J., Povich M.S., Kendrew S. et al. - "The Milky Way Project First Data Release: a bubblier Galactic disc". Monthly Not. of the Royal Astron. Soc. 424(4), 2012. Link

Progetto "Old Weather"

Luterbacher J., Allan R. et al. - "The Importance and Scientific Value of Long Weather and Climate Records; Examples of Historical Marine Data Efforts across the Globe". Climate 12(3), 2024. Link

Van Hyning V., Bibeault B. et al. - "Shifting Roles of Citizen Scientists Accelerates High-Quality Data Collection for Climate Change Research". ASIS&T Proceedings 60(1), 2023. Link

Aucott P., Southall H. et al. - "Citizen science through old maps: Volunteer motivations in the GB1900 gazetteer-building project". Historical Methods 52(3), 2019. Link

Eveleigh A., Jennett C. et al. - "Designing for Dabblers and Deterring Drop-Outs in Citizen Science". CHI 2014. Link

Jennette C. - "I want to be a Captain! I want to be a Captain!": Gamification in the Old Weather citizen science project". Gamification, 2013. Link

Jennette C. et al. - "Creativity in citizen cyberscience: All for one and one for all". ACM WebSci, 2013. Link

Loetzer L., Schneider D., Jettett C. et al. - "Learning by volunteer computing, thinking and gaming: What and how are volunteers learning by participating in Virtual Citizen Science". 7th ESREA European Conference, 2013. Link

Progetto "Planet Hunter/Exoplanets/Planet 9"

Rothermich A., Faherty J.K. et al. - "89 New Ultracool Dwarf Comoving Companions Identified with the Backyard Worlds: Planet 9 Citizen Science Project". The Astron J 167(6), 2024. Link

Killestein T.L., Kelsey L. et al. - "Kilonova Seekers: the GOTO project for real-time citizen science in time-domain astrophysics". Monthly Not. of the Royal Astron. Soc. 533(2), 2024. Link

O'Brien S., Gill S. et al. - "Planet Hunters NGTS: New Planet Candidates from a Citizen Science Search of the Next Generation Transit Survey Public Data". The Astron J 167(5), 2024. Link

Peluso D., Esposito T.M. et al. - "The Unistellar Exoplanet Campaign: Citizen Science Results and Inherent Education Opportunities". PASP 135, 2023. Link

Jalowiczor P.A., Casewell S. et al. - "Identification of a Low-mass Companion to the White Dwarf SDSS J131730.84+483332.7". Res. Notes AAS 5(76), 2021. Link

Faherty J.K., Gagnè J. et al. - "A Wide Planetary Mass Companion Discovered through the Citizen Science Project Backyard Worlds: Planet 9". Astrophys J 923(48), 2021. Link

Eisner N.L., Barragan O. et al. - "Planet Hunters TESS III: two transiting planets around the bright G dwarf HD 152843".
Monthly Not. of the Royal Astron. Soc. 505(2), 2021. Link

Cacciapuoti L., Kostov V.B. et al. - "The TESS Triple-9 Catalog: 999 uniformly vetted candidate exoplanets". Monthly Not. of the Royal Astron. Soc. 513(1), 2021. Link

Eisner N.L., Barragan O. et al. - "Planet Hunters TESS II: findings from the first two years of TESS". Monthly Not. of the Royal Astron. Soc. 501(4), 2021. Link

Meisner A.M., Faherty J.K. et al. - "Spitzer Follow-up of Extremely Cold Brown Dwarfs Discovered by the Backyard Worlds: Planet 9 Citizen Science Project". The Astrophys J 899(2), 2020. Link

Eisner N.L., Barragan O. et al. - "Planet Hunters TESS I: TOI 813, a subgiant hosting a transiting Saturn-sized planet on an 84-day orbit". Monthly Not. of the Royal Astron. Soc. 494(1), 2020. Link

Faherty J.K., Goodman S. et al. - "WISE 2150-7520AB: A Very Low-mass, Wide Comoving Brown Dwarf System Discovered through the Citizen Science Project Backyard Worlds: Planet 9". The Astrophys. J. 889(2), 2020. Link

Caselden D., Meisner A.M. et al. - "The Backyard Worlds: Planet 9 Citizen Science Project -- Status and Discoveries". AAS Meeting 233, 2019. Link

Zink J.K., Lintott C.J. et al. - "Catalog of New K2 Exoplanet Candidates from Citizen Scientists". Res. Notes AAS 3(43), 2019. Link

Faherty J.K., Kuchner M. et al. - "The Backyard Worlds: Planet 9 Citizen Science Project". AAS Meeting 231, 2018. Link

Christiansen J.L., Crossfield J.M. et al. - "The K2-138 System: A Near-Resonant Chain of Five Sub-Neptune Planets Discovered by Citizen Scientists". The Astronomical Journal 155(2), 2018. Link

Schmitt J.R., Tokovinin A. et al. - "Planet Hunters X: Searching for nearby neighbors of 75 planet and eclipsing binary candidates from the K2-Kepler Extended Mission". The Astronom J. 151(6), 2016. Link

Wang J., Fischer D.A., Barclay T. et al. - "Planet Hunters VIII. Characterization of 41 long-period exoplanet candidates from Kepler archival data". The Astrophys. J. 815(2), 2015. Link

Boyajian T.S., LaCourse D.M. et al. - "Planet Hunters IX. KIC 8462852 – Where’s the flux?". Monthly Not. of the Royal Astron. Soc. 457 (4), 2015. Link

Kato T., Osaky Y. - "GALEX J194419.33+491257.0: An unusually active SU UMa-type dwarf nova with a very short orbital period in the Kepler data". Astron Society of Japan 66(2), 2014. Link

Schmitt J.R., Agol R. et al. - "Planet Hunters. VII. Discovery of a New Low-mass, Low-density Planet (PH3 C) Orbiting Kepler-289 with Mass Measurements of Two Additional Planets (PH3 B and D)". The Astrophys.J. 795, 2014. Link

Schmitt J.R., Wang J. et al. - "Planet Hunters. VI. An indipendent characterization of KOI-351 and several long period planet candidates from the Kepler archival data". The Astronom J. 148(28), 2014. Link

Wang J., Fischer D.A., Barclay T. et al. - "Planet Hunters V. A Confirmed Jupiter-Size Planet in the Habitable Zone and 42 Planet Candidates from the Kepler Archive". Astrophys J. 776(10), 2013. Link

Gies D.R., Guo Z., Howell S.B. et al. - "Planet Hunters: KIC 9406652: An Unusual Cataclysmic Variable in the Kepler Field of View". Astrophys J. 775(1), 2013. Link

Gies D.R., Guo Z. et al. - "KIC 9406652: An Unusual Cataclysmic Variable in the Kepler Field of View". The Astrophys.J. 775, 2013. Link

Lintott C., Swhamb M.E. et al. - "Planet Hunters: new Kepler planet candidates from analysis of Quater 2". The Astronom J. 145(6), 2013. Link

Swhamb M.E., Orosz J.A. et al. - "Planet Hunters: A Transiting Circumbinary Planet in a Quadruple Star System". The Astronom J. 768(2), 2013. Link

Fischer D.A., Schwamb M.E. et al. - "Planet Hunters: the first two planet candidates identified by the public using the Kepler public archive data". Monthly Not. of the Royal Astron. Soc. 419(4), 2012. Link

Schwamb M.E., Lintott C.J. et al. - "Planet Hunters: Assessing the Kepler Inventory of Short-period Planet". Astrophys J. 754(2), 2012. Link

Progetto "Higgs Hunter"

Jackson C. - "Motivating Participation through Novelty Cues". PHD Thesis, 2020. Link

Laraia M., Wright D. et al. - "Efficient Label Gathering for Machine Training: Results from Muon Hunter 2". Intern Cosmic Ray Conf, 2019. Link

Barr A.J., Haas A. - "Citizen Scientist Community Engagement with the HiggsHunters project at the Large Hadron Collider". Research for All Journal 2(2), 2018. Link

Feng Q., Jarvis J. - "A citizen-science approach to muon events in imaging atmospheric Cherenkov telescope data: the Muon Hunter". Sissa Proc of Science, 2017. Link

Jackson C., Crowston K. et al. - "Working in the Shadows: Anonymous Contributions by Users in Citizen Science". 2017. Link

Bird R., Daniel M.K. et al. - "Muon Hunter: a Zooniverse project". TAUP 2017. Link

Haas A. - "HiggsHunters - a citizen science project for ATLAS". Atlas Softw Proceeding at Cern, 2017. Link

Barr A.J., Kalderon C.W. - "'That looks weird' - evaluating citizen scientists' ability to detect unusual features in ATLAS images of LHC collisions". The Atlas Comunication, 2016. Link

Progetto "Cairo Geniza"

Dudley M., Reader S. - "Serendipity in the Cairo Geniza". Startwords 2, 2021. Link

Progetto "Etch a Cell"

Smith P., King O.N.F. et al. - "Online citizen science with the Zooniverse for analysis of biological volumetric data". Link

About ZooUniverse

Trouille L., Clifton J.L. et al. - "Unlocking Astronomical Discoveries: Harnessing Zooniverse and Machine Learning for Large Data Sets". Bulletin of the Amer Astr Soc 56(2), 2024. Link

Ponti M., Kloetzer L. et al. - "Can't we all just get along? Citizen scientists interacting with algorithms". Human Computation 8(2), 2021. Link

Khairunissa I., Khodursky S. et al. - "Gender Imbalance and Spatiotemporal Patterns of Contributions to Citizen Science Projects: the case of Zooniverse". Front. Phys. 9, 2021. Link

Barbosu S., Gans J.S. - "Storm crowds: Evidence from Zooniverse on crowd contribution design". Research Policy 51(1), 2021. Link

Fortson L. - "A Brief Tour of the Zooniverse: How Crowdsourcing Science is Solving Big Data Problems in Research". APS April Meeting 65(2), 2020. Link

Herodotou H., Aristeidou M. et al. - "What Do We Know about Young Volunteers? An Exploratory Study of Participation in Zooniverse". Citizen Science: Theory and Practice 5(1), 2020. Link

Johnson L., Trouille L. et al. - "Unlocking Your Data Through People-Powered Research with the Zooniverse". Bulletin of the Amer Astron Soc 52(6), 2020. Link

Lintott C.J. - "Citizen science: The past 200 years". Astronomy&Geophysics 61(2), 2020. Link

Shanley L.A. - "People-powered discovery". Science 367(6474), 2020. Link

Desjardins R. - "Are Citizen Science “Socials” Multilingual? Lessons in (Non)translation from Zooniverse". When Transl goes digital book, 2020. Link

Trouille L., Lintott C.J. - "Zooniverse Project Builder Platform". Americ Astron Soc Meeting #235, 2020. Link

Jennings P., Lintott C.J. - "Notes and News: Into the Zooniverse: An interview with Prof Chris Lintott". J of the British Astronom Assoc 130(1), 2020. Link

Lintott C.J - "The crowd and the cosmos: adventures in the Zooniverse". OUP Oxford, 2019. Link

Truille L., Lintott C.J et al. - "Citizen science frontiers: Efficiency, engagement, and serendipitous discovery with human–machine systems". PNAS 116(6), 2019. Link

Crowston K, Mitchell E.M et al. - "Coordinating Advanced Crowd Work:Extending Citizen Science". 51st Hawaii International Conference on System Sciences, 2018. Link

Segal A., Kamar E. et al. - "Optimizing Interventions via Offline Policy Evaluation: Studies in Citizen Science". AAAI Conf on Artific Intell, 2018. Link

Fortson L., Lintott C. et al. - "Optimizing the Human-Machine Partnership with Zooniverse". ACM Collective Intelligence Conf, 2018. Link

Lintott C., Truille L.- "Zooniverse, the online repository for Citizen Science". J of World Syst Research 24(1), 2018. Link

Spiers H., Swanson A. et al. - "Patterns of Volunteer Behaviour Across Online Citizen Science". The Web Conference, 2018. Link

Zevin M., Coughlin S. et al. - "Gravity Spy:  Integrating Advanced LIGO Detector Characterization, Machine Learning, and Citizen Science". Classical and Quantum Gravity 34(6), 2017. Link

Darch P.T. - "When Scientists Become Social Scientists: How Citizen Science Projects Learn About Volunteers". Intern J of Digital Curation 12(2), 2017. Link

Watson D., Floridi L. - "Crowdsourced science: sociotechnical epistemology in the e-research paradigm". Synthese, 2016. Link

Yadav P., Darlington J. - "Design Guidelines for the User-Centred Collaborative Citizen Science Platforms". Human Computation 3(1), 2016. Link

Masters K., Lintott C. et al. - "Science Learning via Participation in Online Citizen Science". Journal of Science Communic 15(3), 2016. Link

Ponciano L., Brasileiro F. et al. - "Considering human aspects on strategies for designing and managing distributed human computation". J of Internet Services and Appl 5(10), 2014. Link

Darch P. - "Managing the Public to Manage Data: Citizen Science and Astronomy". Int Journal of Digital Curation 9(1), 2014. Link

Madison M.J. - "Commons at the Intersection of Peer Production, Citizen Science, and Big Data: Galaxy Zoo". Legal Studies Research Paper Series 35, 2014. Link

Reed J., Raddick M.J. et al. - "An Exploratory Factor Analysis of Motivations for Participating in Zooniverse, a Collection of Virtual Citizen Science Projects". 46th Hawaii Int Conf on System Science, 2013. Link

Carol C., Lintott C. - "Citizen Science:Contributions to Astronomy Research". Arxiv, 2012. Link

Borne K.D. - "The Zooniverse: A Framework for Knowledge Discovery from Citizen Science Data". American Geophysical Union Fall Meeting, 2011. Link

Pubblicazioni

Progetti Italiani

(Italian's projects)

Gene@Home (Tn-Grid)

--2023--

Pilati S, Moser C. et al. - "Using OneGenE and Grapedia Resources to Support Research in Grapevine Physiology". GRAPEDIA Annual Meeting, 2023. Link

Dolgaleva D., Pelagalli C. et al. - "Pair of Genes: Technical Validation of Distributed Causal Role Attribution to Gene Network Expansion". Lecture Notes in Computer Science 14098 (2023). Link

--2022--

Dolgaleva D., Pelagalli C. et al. - "Distributed Computing for Gene Network Expansion in R Environment". Lecture Notes in Computer Science 13708 (2022). Link

--2021--

Pilati S., Malacarne G. et al. - "Vitis OneGenE: A Causality-Based Approach to Generate Gene Networks in Vitis vinifera Sheds Light on the Laccase and Dirigent Gene Families". Biomolecules 11(12), 2021. Link

--2020--

Blazieri E., Tebaldi T. et al. - "A Computing System for Discovering Causal Relationships among Human Genes to Improve Drug Repositioning". IEEE Transaction on Emerging topics in Comput, 2020. Link

Pilati S., Malacarne G. et al. - "Finding functional interactions among grapevine genes using transcriptomic data and NES2RA algorithm". Intergrape Conference 2020. Link

--2019--

Masera L. - "Multi-target Prediction Methods for Bioinformatics". Phd Thesis, 2019. Link

Asnicar F., Masera R. et al. - "OneGenE: Regulatory Gene Network Expansion via Distributed Volunteer Computing on BOINC". 27th Euromicro Intern Conf on Parallel, Distrib and Network-Base Process (PDP), 2019. Link

--2018--

Malacarne G., Pilati S., Asnicar F. et al. - "Discovering causal relationships in grapevine expression data to expand gene networks. A case study: four networks related to climate change". Front Plant Sci, 2018 Link

Asnicar F., Masera L., Coller E., Cavecchia V. et al. - "NES2RA: Network expansion by stratified variable subsetting and ranking aggregation". Inter J of High Perform Comput 32(3), 2018. Link

--2017--

Rumyantsev A., Blazieri E., Cavecchia V. et al. - "On Distributed R Computations over BOINC". Proceeding of BOINC FAST 2017. Link

--2015--

Asnicar F., Sella N., Morettin P., Cavecchia V. et al. - "TN-Grid and Gene@home project: Volunteer Computing for Bioinformatics". BOINC:FAST 2015. Link

Erculiani L., Asnicar F., Sella N., Cavecchia V. et al. - "Discovering Candidates for Gene Network Expansion by Variable Subsetting and Ranking Aggregation". Network Biology in SIG Poster, 2015. Link

--2014--

Cavecchia V. - "Gene@Home - Computational Biology project for GEne Networks Expansion on a Distibuited Platform". 10th Boinc Workshop, 2014. Link

Blanzieri E., Moser C., Cavecchia V, SCC11 Team - "Gene@Home - GEne Network Expansion". ICT Days, 2014. Link

Simone@Home (closed)

Pieraccini S., Conti S., Chaurasia S., Sironi M. - "Modelling the effect of osmolytes on peptide mechanical unfolding". Chem Physics Letters 578, 2013. Link

Pubblicazioni

Progetti Chiusi

(Closed)

Abc ° Acustics ° Anderson Attack ° Aqua ° Astropulse ° Bealf ° BraTS ° CAS ° Chess ° Climate ° Collatz ° Constellation ° Correlizer ° CSG ° DG Putra ° DistribuitedDataMining ° Docking ° Drugdiscovery ° Edges ° EoN2 ° Extremadura ° Feynman ° Find/Fight Malaria ° Genome ° Hep ° Hydrogen ° Ibercivis ° Lattice ° Leiden ° MalariaControl ° Magnetism ° NanoHive ° NetMax ° Neurona ° Nrg ° Oproject ° Optima ° Orbit ° Physiome ° Poem ° Pogs ° Predictor ° Primaboinca ° Proteins ° PucBi ° QChemPedia ° Rectilinear Crossing Number ° RenderFarm ° RiojaScience ° Sat ° ScreensaverLifeSaver ° Simap ° Spinhenge ° SuperLink ° Sztaki ° TACC ° Tampaku ° Terrain ° Ufluids ° Uspex ° Van Der Waerden Numbers ° VGTU ° Virtual Prairie ° Volpex ° VRS ° Xansons4Code

ABC@Home

Martin G., Miao W. - "ABC Triples". Arxiv, 2014. Link

Palenstijn W.J. - "Enumerating ABC Triples". DIAMANT/EIDMA Symposium, 2010. Link

Acustics@Home

Zaikin O., Petrov P. et al. - "Application of BOINC-based volunteer computing for comparison of the geoacoustic inversion algorithms efficiency". Grid 2018. Link

Zaikin O., Petrov P. et al. - "A Volunteer Computing Project for Solving Geoacoustic Inversion Problems". Open Engineering 7(1), 2017. Link

Zaikin O., Petrov P. et al. - "A GPU-enabled Black-box Optimization in Application to Dispersion-based Geoacoustic Inversion". Optima 2017. Link

Petrov P., Zaikin O. - "Application of iterative hill climbing to the sound speed profile inversion in underwater acoustics". IOP Conference on Materials, 2017. Link

Petrov P., Zaikin O. - "High-Performance Computing in the study on the Accurancy of the bottom Parameters Reconstruction using two different Fitness Functions". Proc of UACE 2017. Link

Zaikin O., Petrov P. et al. - "Using Volunteer Computing for Sound Speed Profile Estimation in Underwater Acoustics". Proceeding of Boinc:Fast 2017. Link

SU/UP

AndersonAttack

Bulavintsev V., Zaikin O., Semenov A. - "A Bitslice Implementation of Anderson’s Attack on A5/1". Open Engin 8, 2017. Link

Bulavintsev V., Zaikin O., Semenov A. - "Implementation of a Brute Force Attack on the A5/1 Keystream Generator in a GPU - based Volunteer Computing Project". Proceeding of Boinc:Fast 2017. Link

Bulavintsev V., Zaikin O., Semenov A. - "Volunteer-computing-based implementation of the Anderson attack on the stream cipher A5/1". 5th Conf Nation Supercomp, 2016. (In Press)

SU/UP

Aqua@Home

--2011--

Karimi K., Dickson N., Hamze F. - "High-Performance Physics Simulations Using Multi-Core CPUs and GPGPUs in a Volunteer Computing Context". J of High Perform Comp Applic 24(1), 2011. Link

Dickson N., Karimi K. et al. - "Importance of Explicit Vectorization for CPU and GPU Software Performance". Journal of Computational Physics 230(13), 2011. Link

Karimi K. et al. - "Investigating the Performance of an Adiabatic Quantum Optimization Processor". Quantum Information Processing, 2011. Link

--2010--

Hamze F., Dickson N., Karimi K. - "Robust Parameter Selection for Parallel Tempering". International Journal of Modern Physics C 21(5), 2010. Link

SU/UP

Astropulse

--2014--

Gautam A., Siemion A. et al. - "SETI Searches for Radio Transients from Kepler Field Planets and Astropulse Candidates". AAS Meetings 224, 2014. Link

--2013--

Korpela E., Anderson D. - "Astropulse: A Search for Microsecond Transient Radio Signals Using Distributed Computing". Astrophysical Journal 767(1), 2013. Link

--2010--

Siemion A., Von Korff J., Korpela E. et al. - "New SETI Sky Surveys for Radio Pulses". Acta Astr. 67(1342), 2010. Link

--2009--

Van Korff J., Werthimer D., Korpela E. - "Astropulse: a Multibeam Sky Survey for Microsecond Transient Radio Signals using Arecibo Observatory". Phd Thesis, 2009. Link

--2007--

Korpela E., Werthimer D., Cobb J., Anderson D. et al. - "Astropulse and Fly's Eye: SETI Searches for Transient Radio Signals Using Distributed Computing". Bioastronomy 420, 2007. Link

Bealf

Lukasz Swierczewski - "Testing Beal conjecture using supercomputers and distributed computing platform BOINC". Master Thesis, 2015. Link

SU/UP

BraTS@Home

Coss R. - "Weak Shear Study of Galaxy Clusters by Simulated Gravitational Lensing". Phd Thesis, 2010. Link

Coss R., Flores R. - "Gravitational Lensing Shear Simulations Using Fast Fourier Transform". NASA Missouri Space Grant Consortium, 2009. Link

Coss R., Flores R. - "BRaTS@Home and BOINC Distributed Computing for Parallel Computation". American Astronomical Society 40, 2008. Link

Cas@home

Protein Structure + High Energy Physics + Nanotechnologies + Project Infrastructure

Protein Structure

--2015--

Bu D. - "TreeThreader - Predicting protein structure by using cloud computing". Conference Open Science at the Global Scale: Sharing e-Infrastructures, Sharing Knowledge, Sharing Progress, 2015. Link

--2014--

Legrand A. - "Replication and redundancy in Boinc - Cas@Home case". 10th Boinc Workshop, 2014. Link

--2013--

Wenjing W., Chen G. - "Harness public computing resources for protein structure prediction computing". Inter Sympos on Grid and Clouds, 2013. Link

Wenjing W. - "Cas@Home Status". The 9th BOINC Workshop, 2013. Link

--2011--

Shao M., Wang S., Wang C., Yuan X. et al. - "Research Incorporating Ab Initio energy into threading approaches for protein structure prediction". BMC Bioinformatics 12(1), 2011. Link

High Energy Physic

--2016--

Kan W. - "Enabling volunteer computing for the BESIII Simulation system". CHEP 2016. Link

--2011--

Wenjing W. - "Port Boss on CAS". CERN OpenLab 2011. Link

--2010--

Wu J. - "BOSS and LHC computing using CernVM and BOINC". CERN OpenLab 2010. Link

Nanotechnologies

--2012--

Wan Y. - "Make full use of free computing resources: An introduction of how to run a LAMMPS job on CAS@home". Group Meeting Scheduled Tsinghua University, 2012. Link

Project Infrastucture

Wu W. - "Port BOSS on Cas", IHEP-CC, 2011. Link

SU/UP

Chess@Home

Jeannot E., Kondo D. - "Distributing Chess Computation for Desktop GRID". ALEAE Meeting, 2010. Link

Yi S., Jeannot E. - "Distributed Chess AI Computation through RT-BOINC". 3rd ALEAE Meeting, 2009. Link

SU/UP

Climate@Home

--2013--

Li J., Li Z. et al. - "Cloud-Enabled Climate@Home". Spatial Cloud Computing: A practical Approach Book, 2013. Link

--2011--

Yang C., Bambacus M., Freeman S. et al. - "A Computing Infrastructure for Supporting Climate Studies". American Geophysical Union Meeting, 2011. Link

Xu C., Yang C., Bambacus M. et al. - "Climate@Home: Crowdsourcing Climate Change Research". American Geophysical Union Meeting, 2011. Link

--2010--

Freeman S., Boller R.A., Yang C. et al. - "Using an Open-Source Grid Framework and Virtualization for Embarrassingly Parallel Computations". American Geophysical Union Meeting, 2010. Link

Sun M., Li J., Huang Q. - "Be a Citizen Scientist for Climate Change". GIS Days, 2010. Link

Collatz Conjecture

Barina D. - "Convergence verification of the Collatz problem". J of Supercomp, 2020. Link

SU/UP

Constellation@Home

--2015--

Hornig A., Birkeland R. et al. - "Opportunities of an open-source global senso network monitoring the radio spectrum for the (new) space community". 66th Internat. Astronautical Congress, 2015. Link

Hornig A., Homeister M. - "TYCHO: Demonstrator and operational satellite mission to Earth–Moon-Libration point EML-4 for communication relay provision as a service". Acta Astronautica 108, 2015. Link

--2013--

Hornig A., Eversmeyer T., Beyermann U. - "Distributed Ground Station Network - a global system for tracking and communication with small satellites as an open service". 64th International Astronautical Congress, 2013. Link

--2011--

Hornig A. - "Building a Distributed Satellite Ground Station Network - A Call To Arms". 28th Chaos Communication Congress, 2011. Link

Hornig A. - "Constellation Platform - A distributed super-computer for aerospace science". Poster at 6th OpenFOAM Workshop, 2011. Link

SU/UP

Correlizer

--2019--

Knoch T.A. - "Simulation of different three-dimensional polymer models of interphase chromosomes compared to experiments–an evaluation and review framework of the 3D genome organization". Seminars in Cell & Devel Biol 90, 2019. Link

--2018--

Knoch T.A. - "A Guided Protocol for Array Based T2C: A High-Quality Selective High-Resolution High-Throughput Chromosome Interaction Capture". Current Protoc in Human Genetics 99(1), 2018. Link

--2016--

Knoch T.A., Abuseiris A. et al. - "The detailed 3D multi-loop aggregate/rosette chromatin architecture and functional dynamic organization of the human and mouse genomes". Epigenetics Chromatine 9, 2016. Link

--2010--

Abuseiris A., Emmen A., Knoch T.A. - "Porting and Use of “Correlizer” to Investigate DNA Sequence Correlations". 3rd Almeregrid Desktop Experience, 2010. Link

--2009--

Knoch T.A., Göker M. et al. - "Fine-structured multi-scaling long-range correlations in completely sequenced genomes—features, origin, and classification". Eur. Biophys. J., 2009. Link

--2008--

Knoch T.A., Baumgartner V. et al. - "Large-Scale Resource Sharing at Public Funded Organizations". 4th International Conference on e-Social Science, 2008. Link

CSG

Dna + Wildlife + SubNetSum + Climate Tweet

Progetto DNA

--2015--

Zarns K, Desell T., Nechaev S., Dhasarathy A. - "Searching the Human Genome for Snail and Slug With DNA@Home". EScience Conference, 2015. Link

--2012--

Desell T., Newberg L.A., Szymanski B.K. et al. - "DNA@Home: Using Volunteered Computers for Finding Transcription Factor Binding Sites". 2nd Intern Congr on Comput Applic and Comput Science vol. 144, 2012. Link

--2011--

Desell T., Newberg L.A., Szymanski B.K. et al. - "Finding Protein Binding Sites Using Volunteer Computing Grids". 2nd International Congress on Computer Appl and Comput Science (CACS 2011). Link

Progetto Wildlife

--2019--

Bowley C., Mattingly M. et al. - "An analysis of altitude, citizen science and a convolutional neural network feedback loop on object detection in Unmanned Aerial Systems". J of Comput Syst 34, 2019. Link

--2018--

Bowley C., Mattingly M. et al. - "Detecting Wildlife in Unmanned Aerial Systems Imagery Using Convolutional Neural Networks Trained with an Automated Feedback Loop". Intern Conf on Comput Science, 2018. Link

Desell T. - "Accelerating the evolution of convolutional neural networks with node-level mutations and epigenetic weight initialization". Genetic and Evol Comput Conf Companion GECCO, 2018. Link

--2017--

Desell T. - "Developing a Volunteer Computing Project to Evolve Convolutional Neural Networks and Their Hyperparameters". EScience Conf, 2017. Link

Bowley C, Barnas A., Desell T. et al. - "Toward Using Citizen Scientists to Drive Automated Ecological Object Detection in Aerial Imagery". EScience Conf, 2017. Link

Desell T. - "Large Scale Evolution of Convolutional Neural Networks Using Volunteer Computing". Gecco. Link

--2016--

Barnas A., Mattingly M., Desell T. et al. - "Developing a Citizen Science Web Portal for Manual and Automated Ecological Image Detection". 12th IEEE EScience. Link

Bowley C., Andes A., Desell T. et al. - "Detecting Wildlife in Uncontrolled Outdoor Video using Convolutional Neural Networks". 12th IEEE EScience. Link

--2015--

Goehner K., Desell T., Eckroad R. et al. - "A Comparison of Background Subtraction Algorithms for Detecting Avian Nesting Events in Uncontrolled Outdoor Video". EScience Conference. Link

Desell T., Goehner K., Andes A. et al. - "On the Effectiveness of Crowd Sourcing Avian Nesting Video Analysis at Wildlife@Home". Procedia Comput Science 51. Link

Palarski J., Conrad N. - "Predation and Parental Care at Blue-Winged Teal (Anas discors) Nests in North Dakota". The Wildlife Society's 22nd Conference. Link

Saul A., Eckroad R.A., Goehner K. et al. - "Effectiveness of Citizen Science vs Expert Observation in Classification of Nesting Bird Behaviors Captured on Camera". The Wildlife Society's 22nd Conference. Link

--2014--

Desell T., Ellis-Felege S.N. et al. - "A Bird’s Eye View of ... Birds. Combining Technology and Citizen Science for Conservation." The Wildlife Professional. Link

Goehner K, Desell T. - "Computer Vision to Aid in WIldlife Surveillance". The 2014 EPSCoR/IDeA Conference. Link

Desell T., Ellis-Felege S.N. et al. - "Wildlife@Home: Conservation Outreach Using Nest Cameras, Citizen Science and Computer vision". The North Dakota Chapter of the Wildlife Society Conference. Link

--2013--

Desell T., Marsh R., Goehner K. et al. - "Wildlife@Home: Combining Crowd Sourcing and Volunteer Computing to Analyze Avian Nesting Video". 9th IEEE International Conf on E-Science. Link

Progetto SubnetSum

O'Neil T., Desell T. - "Empirical Support for the High-Density Subset Sum Decision Threshold". 14th IEEE Canadian Workshop on Information Theory (CWIT'15), 2015. Link

Progetto Climate Tweets

Kirilenko A.P., Desell T. et al. - "Crowdsourcing Analysis of Twitter Data on Climate Change: Paid Workers vs. Volunteers". Sustainability 9(11), 2017. Link

DG Putra

Sjaugi M.F., Latip R. et al. - "DG@PUTRA : An experience in integrating desktop and service grid at University Putra Malaysia". Edges Seminaries, 2012. Link

SU/UP

Distribuited Data Mining

--2013--

Schlitter N., Falkowski T., Lässig J. - "DenGraph-HO: a density-based hierarchical graph clustering algorithm". Expert Systems 31(5), 2013. Link

Schlitter N. - "Distributed Data Analytics using RapidMiner and BOINC". Rapidminer International Conference, 2013. Link

--2011--

Schlitter N., Falkowski T., Lässig J. - "DenGraph-HO: Density-based Hierarchical Community Detection for Explorative Visual Network Analysis". 31st SGAI International Conference on Innovative Techniques and Applications of Artificial Int., 2011. Link

Voigt D., Eysholdt U. - "Identifying relevant analysis parameters for the classification of vocal fold dynamics". Journ of Acustic Society of America 130(4), 2011. Link

--2010--

Voigt D., Lohscheller J., Döllinger M., Yang A., Eysholdt U. - "Automatic diagnosis of vocal fold paresis by employing phonovibrogram features and machine learning methods". Comput. Methods Programs Biomed. 99(3), 2010. Link

Voigt D., Döllinger M. et al. - "Classification of functional voice disorders based on phonovibrograms". Artificial Intelligence Medicine 49(1), 2010. Link

Voigt D. - "Objective Analysis and Classification of Vocal Fold Dynamics from Laryngeal High-Speed Recordings". Kommunikationsstorungen - Berichte Aus Phoniatrie Und Padaudiologie Book, 2010. Link

--2009--

Falkowski T. - "Community Analysis in Dynamic Social Networks", 2009. Link

Schlitter N., Falkowski T. - "Mining the Dynamics of Music Preferences from a Social Networking Site". International Conference on Advances in Social Network Analysis and Mining, IEEE Computer Society, 2009. Link

Falkowski T. - "Community Analysis in Dynamic Social Networks". Goettingen: Sierke Verlag; 2009. Link

--2008--

Falkowski T., Schlitter N. - "Analyzing the Music Listening Behavior and its Temporal Dynamics Using Data from a Social Networking Site", 2008. Link

Schlitter N. A. - "Case Study of Time Series Forecasting with Backpropagation Networks". Fak. für Informatik; 2008. Link

SU/UP

Docking@Home

2017 - 2013 - 2012 - 2011 - 2010 - 2009 - 2008 - 2007 - 2006 - 2005 - 2004

--2017--

Zhang B., Estrada T., Cicotti P., Taufer M. et al. - "Enabling scalable and accurate clustering of distributed ligand geometries on supercomputers". Parallel Computing 63, 2017. Link

--2013--

Zhang B., Estrada T., Cicotti P., Taufer M. - "On efficiently capturing scientific properties in distributed Big Data without moving the data - A Case Study in Distributed Structural Biology using MapReduce". 16th IEEE International Conferences on Computational Science and Engineering, 2013. Link

Estrada T., Pusecker M., Torres M., Cohoon J., Taufer M. - "Benchmarking Gender Differences in Volunteer Computing Projects". 3rd Workshop on Analyzing and Improving Collaborative eScience with Social Networks (eSoN), 2013. Link

--2012--

Matheny M, Schlachter S., Crouse L., Kimmel E., Estrada T., Taufer M. et al. - "ExSciTecH: Expanding Volunteer Computing to Explore Science, Technology, and Health". 2nd workshop on Analyzing and Improving Collaborative eScience with Social Networks, 2012. Link

Estrada T.,Zhang B., Ciccotti P., Armen R., Taufer M. - "A scalable and accurate method for classifying protein-ligand binding geometries using a MapReduce approach". Computers in Biology and Medicine 42(7), 2012. Link

Estrada T.,Zhang B., Ciccotti P., Armen R., Taufer M. - "Reengineering high-throughput molecular datasets for scalable clustering using MapReduce". 14th IEEE International Conference on High Performance Computing and Communications, 2012. Link

--2011--

Rahaman O., Estrada T., Doren D., Taufer M., Brooks C.L., Armen R.S. - "Evaluation of Several Two-Step Scoring Functions Based on Linear Interaction Energy, Effective Ligand Size, and Empirical Pair Potentials for Prediction of Protein-Ligand Binding Geometry and Free Energy". J. Chem. Information and Modeling 51(9), 2011. Link

Estrada T. and Taufer M. - "Providing Application-Level Quality of Science in Volunteer Computing". 13th IEEE International Conference on High Performance Computing and Communications (HPCC-2011). Link

--2010--

Estrada T., R. Armen, Taufer M. - "Automatic Selection of Near-Native Protein-Ligand Conformations using a Hierarchical Clustering and Volunteer Computing". International Conference On Bioinformatics and Computational Biology (ACM-BCB),2010. Link

--2009--

Estrada T., Taufer M., Anderson D. - "Performance Prediction and Analysis of BOINC Projects: An Empirical Study with EmBOINC". Journal of Grid Computing 7(4), 2009. Link

Taufer M., Armen R.S., Chen J., Teller P.J., Brooks C.L. - "Computational Multi-Scale Modeling in Protein-Ligand Docking". IEEE Engineering in Medicine and Biology Magazine 28(2), 2009. Link

Atlas J., Estrada T., Decker K., Taufer M. - "Balancing Scientist Needs and Volunteer Preferences in Volunteer Computing using Constraint Optimization". International Conference on Computational Science (ICCS), 2009. Link

Estrada T., Reed K., Anderson D., Taufer M. - "EmBOINC: An Emulator for Performance Analysis of BOINC Projects". PCGrid Conferenze, 2009. Link

Estrada T., Reed K., Taufer M. - "Modeling Job Lifespan Delays in Volunteer Computing Projects". 9th IEEE International Symposium on Cluster Computing and Grid (CCGrid), 2009. Link

--2008--

Estrada T., Fuentes O., Taufer M. - "A Distributed Evolutionary Method to Design Scheduling Policies for Volunteer Computing". ACM Computing Frontiers, 2008. Link

--2007--

Lopez G., Taufer M., Teller P.J. - "Evaluation of IEEE 754 Floating-Point Arithmetic Compliance Across a Wide Range of Heterogeneous Computers". Richard Tapia Celebration of Diversity in Computing Conference, 2007. Link

Taufer M., Kerstens A., Estrada T., Flores D.A., Teller P.J. - "SimBA: a Discrete Event Simulator for Performance Prediction of Volunteer Computing Projects". International Workshop on Principles of Advanced and Distributed Simulation 2007 (PADS'07). Link

Taufer M., Kerstens A., Estrada T., Flores D.A., Zamudio R., et al. - "Moving Volunteer Computing towards Knowledge-Constructed, Dynamically-Adaptive Modeling and Scheduling". First Workshop on Large-Scale, Volatile Desktop Grids (PCGrid'07), 2007. Link

--2006--

Estrada T., Flores D.A., Taufer M., Teller P., Kerstens A., Anderson D. - "The Effectiveness of Threshold-based Scheduling Policies in BOINC Projects". 2st IEEE International Conference on e-Science and Grid Technologies,2006. Link

--2005--

Taufer M., Crowley M., Price D., Chien A.A., Brooks C.L. - "Study of an Accurate and Fast Protein-Ligand Docking Algorithm based on Molecular Dynamics". Concurrency and Computation: Practice and Experience. Volume 17, 2005. Link

Taufer M., Teller P.J, Anderson D., Brooks C.L. - "Metrics for Effective Resource Management in Global Computing Environments". 1st IEEE International Conference on e-Science and Grid Technologies, 2005. Link

Taufer M., Anderson D., Ciccotti P., Brooks C.L. - "Homogeneous Technique to Ensure Integrity of Molecular Simulation Results Using Public Resources". 14th Heterogeneous Computing Workshop, 2005. Link

--2004--

Taufer M., Crowley M., Price D., Chien A.A., Brooks C.L. - "Study of an Fast Protein-Ligand Docking Algorithm based on Molecular Dynamics". IEEE International Workshop on High Performance Computational Biology, 2004. Link

DrugDiscovery

Berishvili V., Voronkov A. et al. - "Machine Learning Classification Models to Improve the Docking-based Screening: A Case of PI3K-Tankyrase Inhibitors". Molecular Informatics 37(11), 2018. Link

Voronkov A., Shultz J. - "Drugdiscovery@home - distributed volunteer computing project in the fields of cancer, aging and stem cells". SENS Research Conference 4, 2009. Link

SU/UP

Edges@Home

Riguardanti l'infrastruttura Edges-Edgi (Concerning the Edges-Edgi infrastructure).

2015 - 2014 - 2013 - 2012 - 2011 - 2010 - 2009 - 2008

--2015--

Kacsuk P., Farkas Z., Marosi A. et al. - "Desktop grid in the era of Cloud Computing". Grid Computing: Techniques and Future Prospects, 2015. Link

Fedak G. - "Contributions to Desktop Grid". Phd Thesis, 2015. Link

--2014--

Horvath F., Ittzes P. - "Supporting environmental modelling with Taverna workflows, web services and desktop grid technology". 7th Inter Congr on Envirmen Modelling and Software, 2014. Link

Visegradi A., Kovacs J., Kasuk P. - " Efficient extension of gLite VOs with BOINC based desktop grids". Future Gen. Comp. Syst. 32, 2014. Link

--2013--

Marosi A., Kovacs J., Kacsuk P. - "Towards a volunteer cloud system". Future Generation Computer Systems 29(6), 2013. Link

Ponciano L., Brasileiro F. - "Assessing Green Strategies in Peer-to-Peer Opportunistic Grids". J. of Grid Computing 11(1), 2013. Link

Hanappe P. - "Latest developments on energy measurements". 9th Boinc Workshop, 2013. Link

Visegradi A. - "Random Linear Coding in Distributed Storage Systems". 9th Boinc Workshop, 2013. Link

Delamare S., Fedak G., Kondo D. et al. - "Advanced QoS Prototype for the EDGI Infrastructure". EDGI JRA2, 2013. Link

Delamare S., Fedak G., Kondo D. et al. - "Intermediate QoS Prototype for the EDGI Infrastructure". EDGI JRA2, 2013. Link

Delamare S., Fedak G., Kondo D. et al. - "SpeQuloS: a QoS service for hybrid and elastic computing infrastructures". Cluster Computing, 2013. Link

--2012--

Grunzke R., Birkenheuer G, Blunk D., Breuers S., Brinkmann A. et al. - "A Data Driven Science Gateway for Computational Workflows", UNICORE Summit 15, 2012. Link

Terstyanszky G., Kiss T., Kukla T., Lichtenberger Z., Winter S., Greenwell P. et al. - "Application Repository and Science Gateway for Running Molecular Docking and Dynamics Simulations". Stud. Health. Tech. Inform. 175, 2012. Link

Acs S., Kovacs J., Terstyanszky G. - "Application Repository based evaluation of the EDGI infrastructure", MIPRO Conference 2012. Link

Boychenko S., Araujo F. - "Benchmarking the EDGI Infrastructure", INForum 2012. Link

Kacsuk P., Marosi A. - "Supporting Web 2.0 communities by volunteer desktop grids". Desktop Grid Computing Book, 2012. Link

Kacsuk P., Marosi A. - "Towards Hybrid Desktop Grid and Cloud Infrastructures".Desktop Grid Computing Book, 2012. Link

Sottrup C.U., Kovacs J. - "Transparent execution of ARC jobs on Desktop Grid resources". MIPRO, 2012. Link

Kovacs J., Keller M., Araujo F. et al. - "Monitoring UNICORE jobs executed on Desktop Grid resources". MIPRO, 2012. Link

Terstyanszky G., Kiss T., Kukla T., Lichtenberger Z. et al. - "Application Repository and Science Gateway for Molecular Docking and Diynamic Simulations". Stud.Health Technol. Inform 175, 2012. Link

Terstyanszky G., Kiss T., Kukla T., Winter S. et al.- "Combining Desktop and Service Grids to support e-Scientists to run Simulations".  5th International Conference on Distributed Computing and Grid-technologies in Science and Education, 2012. Link

Lodygensky O., Urbah E., Dadoun S., Simonet A. et al. - "FlyingGrid : from Volunteer Computing to Volunteer Cloud". Computing in High Energy and Nuclear Physics, 2012. Link

Mohammadmersad G. - "Investigating Volunteer Computing for Simul8, a Feasibility Study". Operational Research Society Simulation Workshop 2012. Link

Kecskemeti G., Kertesz A., Marosi A. et al. - "Interoperable Resource Management for Establishing Federated Clouds". 2012. Link

Delamare S., Fedak G., Kondo D., Lodygensky O. - "SpeQuloS: A QoS Service for BoT Applications Using Best Effort Distributed Computing Infrastructures". High Performance and Distribuited Computing Conference, 2012. Link

--2011--

Taylor S.J.R, Ghorbani M.,Mustafee N. et al. - "Distributed Computing and Modelling and Simulation: Speeding up Simulations and Creating Large Models". Winter Simulation Conference, 2011. Link

Davoli E., Meyer N. et al. - "Edges bridge technologies to interconnect service and desktop grid". Remote instrument service on e-infrastructure Book, 2011. Link

Kovacs J., Marosi A.C., Kacsuk P. - "GBAC: Virtualization based execution environment for Desktop Grids". Cracov Grid Workshop, 2011. Link

Kacsuk P. - "How to make Boinc-Based desktop grids even more popular?". IEEE International Symposium on Parallel and Distribuited Processing, 2011. Link

Delamare S. - "Hybrid Distributed Computing Infrastructure Experiments in Grid5000: Supporting QoS in Desktop Grids with Cloud Resources". Grid5000 Spring School, 2011. Link

Keller M., Kovacs J., Brinkmann A. - "Desktop Grids Opening up to UNICORE". Unicore summit 2011. Link

Kacsuk P. - "Enable the use of BOINC for new communities - the IDGF experience". 7th Boinc Workshop, 2011. Link

Kelley I. - "Attic Data Distribution Framework". 7th Boinc Workshop, 2011. Link

Schott B., Emmen A. - "Green Desktop-Grids: Scientific Impact, Carbon Footprint, Power Usage Efficency". Scalable Computing:Practice and Experience 12(2), 2011. Link

Elwaer A., Harrison A., Kelley I., Taylor I. - "Attic: A Case Study for Distributing Data in BOINC Projects". IEEE International Symposium on Parallel and Distribuited Processing, 2011. Link

Reynolds C.J., Winter S., Kiss T. et al. - "Scientific Workflow Makespan Reduction Through Cloud Augmented Desktop Grids". IEEE Conference on Cloud Computing Tech and Science, 2011. Link

Kertesz A., Farkas Z., Kacsuk P. - "Multi-level Brokering Solution for Interoperating Service and Desktop Grids". Lectures in Computer Science 6586, 2011. Link

Lovas R. - "The first year of DEGISCO: hybrid infrastructure and new applications based on BOINC". 7th Boinc Workshop, 2011. Link

Marosi A, Kecskemeti G., Kertesz A., Kacsuk P. - "FCM: an Architecture for Integrating IaaS Cloud Systems". 2nd International Conference on Cloud Computing, Grids and Virtualization, 2011. Link

Kiss T., Kelley I., Kacsuk P. - "Porting Computation and Data Intensive Applications to Distributed Computing Infrastructures Incorporating Desktop Grids". International Symposium on Grids and Clouds, 2011. Link

Elwaer A., Taylor I., Rana O. - "Preference Driven Server Selection in Peer-2-Peer Data Sharing Systems". 4th International Workshop on Data-Intensive distribuited Computing, 2011. Link

Marosi A., Kacsuk P. - "Workers in the Clouds". 19th Euromicro International Conference on Parallel, Distribuited and Network-Base Processing, 2011. Link

Kacsuk P., Kovaks J. - "Towards a Powerful European DCI Based on Desktop Grids". J. of Grid Computing 9(2), 2011. Link

--2010--

Marosi A.C., Kacsuk P. - "Sandboxing for Desktop Grids Using Virtualization". Parallel, Distributed and Network-Based Processing Conference, 2010. Link

Delamare S., Fedak G., Kondd D, Lodygensky O. - "SpeQuloS: A QoS Service for Hybrid Distributed Computing Infrastructures". Cluster Computing, 2010. Link

Schott B., Emmen A. - "Green Methodologies in Desktop-Grid. An invitation for discussion by the DEGISCO Project". Intern. Multiconference on Computer Science, 2010. Link

Emmen A. - "Desktop Grids take their place in the e-Science distributed computing infrastructure". Proc. Cracow Grid Workshop, 2010. Link

Marosi A., Kovas A. et al. - "The BinSys application on the EDGeS infrastructure". 3rd Almeregrid Workshop, 2010. Link

Farkas Z. - "Improved 3G Bridge scalability to support desktop grid executions". 6th Boinc Workshop, 2010. Link

Marosi A. - "Remote validation of BOINC results – The Web2Grid project". 6th Boinc Workshop, 2010. Link

--2009--

Marosi A. - "Virtualization for Desktop Grid Clients". 5th Boinc Workshop, 2009. Link

Balaton Z. - "3G-Bridge: Bridging the Gap between BOINC and Other Systems". 5th Boinc Workshop, 2009. Link

Terstyanszky G., Kiss T. - "Porting applications to the Grid using the EDGeS Application Development". 25th Open Grid Forum Meeting, 2009. Link

Urbah E., Kacsuk P., Farkas Z. et al. - "EDGeS: Bridging EGEE to BOINC and XtremWeb". J of Grid Computing, 2009. Link

Farkas Z. - "SG-DG Bridges". CERN Middleware Security Group Meeting, 2009. Link

Urbah E. - "Specific security needs of Desktop Grids". CERN Middleware Security Group Meeting, 2009. Link

Ivaki N.R., Ferreira D., Araujo F - "Benckmarking the 3G-Bridge in the EDGeS Infrastructure". Proc. Cracow Grid Workshop, 2009. Link

Kovaks J. - "Programming Applications for Desktop Grids". EDGes Summer School, 2009. Link

--2008--

Kiss T. - "Porting applications for a combined EGEE/Desktop Grid platform in the framework of the EDGeS infrastructure". EEGE, 2008. Link

Urbah E. - "Why does EDGeS need OGF PGI?". EDGes FP7 Inititive, 2008. Link

Progetto "Mopac"

Brandmaier S., Srivstava V., Tetko I. et al. - "MOPAC@home - A Structural Database for small chemical compounds". 3th Almeregrid Desktop Conference, 2010. Link

Progetto "ISDEP"

Riverol A., Bustos A. et al. - "ISDEP, a fusion application deployed in the EDGeS project". 3rd AlmereGrid Desktop Experience Workshop, 2010. Link

Progetto "Slinca"

2014 - 2013 - 2012 - 2011 - 2010 - 2009

--2014--

Gordienko Y. - "Change of Scaling and Appearance of Scale-Free Size Distribution in Aggregation Kinetics by Additive Rules". Physica A: Statistical Model, 412, 2014. Link

--2013--

Gatsenko O., Baskova O., Fedak G., Lodygensky O., Gordienko Y. - "From Quantity To Quality: Massive Molecular Dynamics Simulation of Nanostructures under Plastic Deformation".  Desktop and Service Grid Distributed Computing Infrastructure, Computer Science, 14, 2013. Link

--2012--

Gatsenko O., Baskova O., Fedak G., Lodygensky O., Gordienko Y. - "Application of Desktop Grid Technology in Material Science". 5th Distributed Computing and Grid-technologies in Science and Education, 2012. Link

--2011--

Gatsenko O., Baskova O., Fedak G., Lodygensky O., Gordienko Y. - "Statistical Properties of Deformed Single-Crystal Surface under Real-Time Video". Monitoring and Processing in the Desktop Grid Distributed Computing Environment, Key Engineering Materials 465, 2011. Link

--2010--

Gatsenko O., Baskova O., Fedak G., Lodygensky O., Gordienko Y. - "Porting Multiparametric MATLAB Application for Image and Video Processing to Desktop Grid for High-Performance Distributed Computing". International Conference of Supercomputer, 2010. Link

Gatsenko O., Baskova O., Fedak G., Lodygensky O., Gordienko Y. - "Kinetics of Defect Aggregation in Materials Science Simulated in Desktop Grid Computing Environment Installed in Ordinary Material Science Lab". 3rd Grid Experience Workshop - Desktop Grid Applications for eScience, 2010. Link

--2009--

Gatsenko O., Gordienko Y. - "Desktop Grid Computing in Materials Science Lab - Example of Development and Execution of Application for Defect Aggregation Simulations". Proc. Cracow Grid Conf, 2009. Link

Progetto "Autodock"

Kiss T., Szmetanko G. et al. - "Molecular Docking Simulations on a Combined Desktop and Service Grid Infrastructure". 3rd AlmereGrid Desktop Experience Workshop, 2010. Link

SU/UP

EoN2

--2014--

Chill S.T., Welborn M. et al. - "EON: software for long time simulations of atomic scale systems". Modell Simul Mater Sci Eng 22, 2014. Link

--2009--

Xu L., Mei D., Henkelman G., - "Adaptive kinetic Monte Carlo simulation of methanol decomposition on Cu(100)". Journal Chemical Phys. 131, 2009. Link

Pedersen N A., Henkelman G., Schiøtz J., Jónsson H. - "Long time scale simulation of a grain boundary in copper". Journal Phys. 11, 2009. Link

Mei D., Xu L., Henkelman G. - "Potential energy surface of methanol decomposition on Cu(110)". Journal Chemical Phys. C 113, 2009. Link

--2008--

Xu L., Henkelman G. - "Adaptive kinetic Monte Carlo for first-principles accelerated dynamics". Journal Chemical Phys. 129(11), 2008. Link

--2003--

Henkelman G., Jónsson H. - "Multiple time scale simulations of metal crystal growth reveal importance of multi-atom surface processes". Phys. Rev. Lett. 90(11), 2003. Link

SU/UP

Extremadura@Home

--2014--

Laredo J.L.J, Lombrana Gonzales D. et al. - "A Peer-to-Peer Approach to Genetic Programming". EuroGP 2014. Link

Laredo J.L.J., Bouvry P., Fernandez De Vega F. et al. - "Designing robust volunteer-based evolutionary algorithms". Genetic Programming and Evolvable Machines 15(1), 2014. Link

Fernandez De Vega F., Trujillo L. et al. - "A Hybrid ECJ+BOINC Tool for Distributed Evolutionary Algorithms". 2014. Link

--2010--

Lombrana Gonzales D., Fernandez De Vega F. et al. - "Characterizing fault tolerance in genetic programming". Future Generation Comp Syst. 26(6), 2010. Link

--2009--

Gonzalez D.L., De Vega F.F. et al. - "Increasing GP Computing Power for Free via Desktop GRID Computing and Virtualization". 17th Euromicro Inter. Confer. on Parallel, Distribuited and Network-base Processing, 2009. Link

--2008--

Lombrana Gonzales D., Fernandez De Vega F. et al. - "Increasing GP Computing Power via Volunteer Computing". PPSN 2008. Link

Lombrana Gonzales D., Fernandez De Vega F. et al. - "Interpreted Applications within BOINC Infrastructure". 2nd Ibergrid Conference, 2008. Link

--2007--

Cardenas Montes M., Vega-Rodriguez M.A. et al. - "Volunteer Computing, an Interesting Option for Grid Computing: Extremadura as Case Study". Lecture Notes in Computer Science 4805, 2007. Link

Chavez de la O F.; Rubio del Solar M. et al. - "A Genetic Programming infrastructure profiting from public computation resources". Spanish Conference on e-Science Grid Computing, 2007. Link

SU/UP

Feynman@Home

Perret-Gallix D. - "Simulate with Grace!". ASCFA Meeting, 2007. Link

SU/UP

Fight Malaria/Find@Home

--2014--

Jaafar H., Chubb A. et al. - "Visualization of a number of large datasets of compounds that have been tested for effectiveness against the Plasmodium Falciparum strain 3D7". Irish J. of Medical Science 183(12). Link

--2007--

Lavin P., Whelan N. - "Distributed biological screening through Volunteer Computing to find useful protein/drug matches for the purpose of malarial drug research". Degree of Master in Comput Science Univ of Dublin. Link

SU/UP

Genome@Home

--2003--

Larson S.M., Desjarlais J.R., Pande V. - "Sequence optimization for native state stability determines the evolution and folding kinetics of a small protein". J of Molec Biol 332(1), 2003. Link

Larson S.M., Garg A., Desjarlais J.R., Pande V. - "Increased detection of structural templates using alignments of designed sequences". Proteins: Structure, Function, and Genetics 51(3), 2003. Link

Larson S.M., Snow C.D., Shirts M.R., Pande V. - "Folding@Home and Genome@Home: Using distributed computing to tackle previously intractable problems in computational biology." Computational Genomics, 2003. Link

--2002--

Larson S.M., England J.L., Desjarlais J.R., Pande V. - "Thoroughly sampling sequence space: large-scale protein design of structural ensembles". Protein Science 11(12), 2002. Link

Larson S.M. - "Identifying structural templates using alignments of designed sequences." SAC-CASP, 2002. Link

--2001--

Larson S.M. - "Folding@home and Genome@home: Protein folding and design with distributed computing." Carleton University Biochemistry & Chemistry Society, 2001. Link

SU/UP

Hep@Home

Du R., Shi J. et al. - "HEP@home: A Volunteer Computing Project to Run Fast Simulation with Delphes for CEPC". EPJ Web of Conf 295, 2024. Link

Amorin A., Villate J., Andrade P. - "HEP@Home - A distributed computing system based on BOINC". CHEP2004 on CERN Publications, 2004. Link

SU/UP

Hydrogen@Home

Shultz J. - "Modeling Biological Hydrogen Production". 4th Boinc Workshop, 2008. Link

Ibercivis