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Stella inattivaStella inattivaStella inattivaStella inattivaStella inattiva
 

Pubblicazioni

 

Multidisciplinari

(Multidisciplinary)

 

Cas ° CSG ° Ibercivis ° WCG ° YoYo

 

 

cas

Cas@home

 

Protein Structure + High Energy Physics + Nanotechnologies

 

Protein Structure

--2015--

Bu D. - "TreeThreader - Predicting protein structure by using cloud computing". Conference Open Science at the Global Scale: Sharing e-Infrastructures, Sharing Knowledge, Sharing Progress, 2015. Link

--2014--

Legrand A. - "Replication and redundancy in Boinc - Cas@Home case". 10th Boinc Workshop, 2014. Link

--2013--

Wenjing W., Chen G. - "Harness public computing resources for protein structure prediction computing". Inter Sympos on Grid and Clouds, 2013. Link

Wenjing W. - "Cas@Home Status". The 9th BOINC Workshop, 2013. Link

--2011--

Shao M., Wang S., Wang C., Yuan X. et al. - "Research Incorporating Ab Initio energy into threading approaches for protein structure prediction". BMC Bioinformatics 12(1), 2011. Link

 

High Energy Physic

--2016--

Kan W. - "Enabling volunteer computing for the BESIII Simulation system". CHEP 2016. Link

--2011--

Wenjing W. - "Port Boss on CAS". CERN OpenLab 2011. Link

--2010--

Wu J. - "BOSS and LHC computing using CernVM and BOINC". CERN OpenLab 2010. Link

 

Nanotechnologies

--2012--

Wan Y. - "Make full use of free computing resources: An introduction of how to run a LAMMPS job on CAS@home". Group Meeting Scheduled Tsinghua University, 2012. Link

 

 


CSG

SU/UP

Dna + Wildlife + SubNetSum + Climate Tweet

 

Progetto DNA

--2015--

Zarns K, Desell T., Nechaev S., Dhasarathy A. - "Searching the Human Genome for Snail and Slug With DNA@Home". EScience Conference, 2015. Link

--2012--

Desell T., Newberg L.A., Szymanski B.K. et al. - "DNA@Home: Using Volunteered Computers for Finding Transcription Factor Binding Sites". 2nd Intern Congr on Comput Applic and Comput Science vol. 144, 2012. Link

--2011--

Desell T., Newberg L.A., Szymanski B.K. et al. - "Finding Protein Binding Sites Using Volunteer Computing Grids". 2nd International Congress on Computer Appl and Comput Science (CACS 2011). Link

 

Progetto Wildlife

--2017--

Desell T. - "Developing a Volunteer Computing Project to Evolve Convolutional Neural Networks and Their Hyperparameters". EScience Conf, 2017. Link

Bowley C, Barnas A., Desell T. et al. - "Toward Using Citizen Scientists to Drive Automated Ecological Object Detection in Aerial Imagery". EScience Conf, 2017. Link

Desell T. - "Large Scale Evolution of Convolutional Neural Networks Using Volunteer Computing". Gecco. Link

--2016--

Barnas A., Mattingly M., Desell T. et al. - "Developing a Citizen Science Web Portal for Manual and Automated Ecological Image Detection". 12th IEEE EScience. Link

Bowley C., Andes A., Desell T. et al. - "Detecting Wildlife in Uncontrolled Outdoor Video using Convolutional Neural Networks". 12th IEEE EScience. Link

--2015--

Goehner K., Desell T., Eckroad R. et al. - "A Comparison of Background Subtraction Algorithms for Detecting Avian Nesting Events in Uncontrolled Outdoor Video". EScience Conference. Link

Desell T., Goehner K., Andes A. et al. - "On the Effectiveness of Crowd Sourcing Avian Nesting Video Analysis at Wildlife@Home". Procedia Comput Science 51. Link

Palarski J., Conrad N. - "Predation and Parental Care at Blue-Winged Teal (Anas discors) Nests in North Dakota". The Wildlife Society's 22nd Conference. Link

Saul A., Eckroad R.A., Goehner K. et al. - "Effectiveness of Citizen Science vs Expert Observation in Classification of Nesting Bird Behaviors Captured on Camera". The Wildlife Society's 22nd Conference. Link

--2014--

Desell T., Ellis-Felege S.N. et al. - "A Bird’s Eye View of ... Birds. Combining Technology and Citizen Science for Conservation." The Wildlife Professional. Link

Goehner K, Desell T. - "Computer Vision to Aid in WIldlife Surveillance". The 2014 EPSCoR/IDeA Conference. Link

Desell T., Ellis-Felege S.N. et al. - "Wildlife@Home: Conservation Outreach Using Nest Cameras, Citizen Science and Computer vision". The North Dakota Chapter of the Wildlife Society Conference. Link

--2013--

Desell T., Marsh R., Goehner K. et al. - "Wildlife@Home: Combining Crowd Sourcing and Volunteer Computing to Analyze Avian Nesting Video". 9th IEEE International Conf on E-Science. Link

 

Progetto SubnetSum

 

O'Neil T., Desell T. - "Empirical Support for the High-Density Subset Sum Decision Threshold". 14th IEEE Canadian Workshop on Information Theory (CWIT'15), 2015. Link

 

Progetto Climate Tweets

Kirilenko A.P., Desell T. et al. - "Crowdsourcing Analysis of Twitter Data on Climate Change: Paid Workers vs. Volunteers". Sustainability 9(11), 2017. Link

 


 ibercivis

Ibercivis

SU/UP

Ibercivis infrastructure + Socientize + Amiloide + Bindsurf + Cells + Criticalidad + Cuanticables + Fusion+ Materiales + Neurosim + Prisioner Dilemma + Sanidad

 

Riguardanti l'infrastruttura Ibercivis

--2014--

Guerrero Hernandez G.D., Imbernon B. et al. - "A performance/cost evaluation for a GPU-based drug discovery application on volunteer computing". Biomed Research International, 2014. Link

--2011--

Ferred D. - "Boinc Balanced Multi Server Enviroment". 7th Boinc Workshop, 2011. Link

--2009--

Benito D., Castejon F., Castelo V. et al. - "Ibercivis: infrastructure, applications anddevelopment workflow". 3rd Ibergrid Conference, 2009. Link

--2008--

Rivero A. - "Ibercivis: status, configuration, and expectations". 4th Boinc Workshop, 2008. Link

--2007--

Antoli B., Castejon F., Giner A., Losilla G. et al. - "ZIVIS: A City Computing Platform Based on Volunteer Computing". 1st Ibergrid Conference, 2007. Link

 

 

Progetto "SOCIENTIZE"

--2016--

Silva C., Monteiro A.J., Manahl C. et al. - "Cell Spotting: Educational and Motivational Outcomes of Cell Biology Citizen Science Project in the Classroom". Journ of Science Communic 15(1). Link

--2015--

Serrano F. - "Green Paper on Citizen Science. Citizen Science for Europe: Towards a better society of empowered citizens and enhanced research". EU Conference. Link

Lostal E., Monteiro A.J. et al. -  "Citizen Science in Education: Students Becoming Cell Biology Researchers". Citizen Science Conference. Link

Monteiro A.J., Silva G.C., Villar J.C. - "Cell Spotting - let's figth cancer together". Science in School Journal 31. Link

Sagarra O., Gutierrez-Roig M. et al. - "Citizen Science practices for Computational Social Sciences research: The conceptualization of Pop-Up Experiments". Front. Phys. 3(93). Link

--2014--

Serrano F. - "White paper on citizen science for Europe". Socientize Conference. Link

Silva C.G., Brito R.M.M, Monteiro A. et al. - "SOCIENTIZE participatory experiments, dissemination and networking activities in perspective". Human Computation  1(2). Link

Ponciano L., Brasileiro F. - "Finding Volunteers’ Engagement Profiles in Human Computation for Citizen Science Projects". Human Comput 1(2). Link

--2013--

Serrano F., Brasileiro F. - "Semantics map application report". Link

Lostal E., Almonacid S. - "Cell Images Application Report".Link

 

 

Progetto "AMILOIDE"

--2017--

Jorge M., Simoes C.J.V., Garrido N.M et al. - "Predicting hydrophobic solvation by molecular simulation: 1. Testing united-atom alkane models". Computational Chemistry 38(6), 2017. Link

--2010--

Simoes C.J.V., Murkherjee T., Brito R.M. M., Jackson R.M. - "Toward the Discovery of Functional Transthyretin Amyloid Inhibitors: Application of Virtual Screening Methods",  J. Chem. Inf. Model. 50(10), 2010. Link

Simoes C.J.V., Riviero A., Brito R.M. M. - "Searching for Anti-Amyloid Drugs with the Help of Citizens: the ‘AMILOIDE’ Project on the IBERCIVIS Platform". ERCIM News 82, 2010. Link

Simoes C.J.V., Riviero A., Taracon A., Serrano S., et al. - "Running faster and further together: the AMILOIDE project, the onset of the Portuguese participation on the Ibercivis volunteer computing network". IBERGRID’10, 2010. Link

 

 

Progetto "BINDSURF"

--2014--

Guerrero G.D., Imbernon B., Sanz F. et al. - "A Performance/Cost Evaluation for a GPU-Based Drug Discovery Application on Volunteer Computing". BioMed Research International vol.2014, 2014. Link

 


Progetto "CELLS"

--2013--

Lostal Lanza E., Serrano Sanz F., Carrodeguas Villar J.A., Martinez Alonso P. et al. - "Cell Images Analysis as a Case of Citizen Science for Advanced Education: Laboratory and School, Back and Forth". 7th International Technology, Education and Development Conference (INTED13), 2013. Link

Lostal Lanza E., Serrano Sanz F., Carrodeguas Villar J.A. et al. - "A case of Citizen Science for Cell Biology Images Analysis". 33th Congresso da Sociedade Brasileira de Computação (CSBC 2013), 2013. Link

 


Progetto "CRITICALIDAD"

--2010--

Martinez-Mendoza A.J., Mendez-Bermudez J.A., Varga I. - "Conductance statistics for the power-law banded random matrix model", IV Mexican Meeting on Experimental and Theoretical Physics, AIP Conf. Proc. 1319, 2010. Link

 


Progetto "CUANTICABLES"

--2013--

Camjayi A., Arrachea L. - "Conductance of a quantum dot in the Kondo regime connected to dirty wires". Physical Review B 86, 235143 (2013). Link



Progetto "FUSION"

--2010--

Bustos A., Castejon F., Fernandez L.A. , Garcia J. et al. - "Impact of 3D features on ion collisional transport in ITER". Nuclear Fusion 50(12), 2010. Link

--2009--

Velasco J.L., Castejon F., Tarancon A. - "Finite orbit width effect in ion collisional transport in TJ-II". Phys. Plasma 16, 2009. Link

--2008--

Castejon F., Serrano F. et al. - "Fusion Plasma Simulation in the Interactive Grid". Computing and Informatics 27, 2008. Link

 

 

Progetto "MATERIALES"

--2012--

Fernandez L.A., Gordillo-Guerrero A., Martin-Mayor V., Ruiz Lorenzo J.J. - "Numerical test of the Cardy-Jacobsen conjecture in the site-diluted Potts model in three dimensions". Physical Review B 86, 2012. Link

 


Progetto "NEUROSIM"

--2012--

Cruz V.L., Ramos J., Martinez-Salazar J. - "Assessment of the Intrinsic Conformational Preferences of Dipeptide Amino Acids in Aqueous Solution by Combined Umbrella Sampling/MBAR Statistics. A Comparison with Experimental Results". J. Phys. Chem. B 116(1), 2012. Link

--2011--

Cruz V.L., Ramos J., Martinez-Salazar J. - "Water-Mediated Conformations of the Alanine Dipeptide as Revealed by Distributed Umbrella Sampling Simulations, Quantum Mechanics Based Calculations, and Experimental Data". J. Phys. Chem. B 115(16), 2011. Link

 


Progetto "PRISIONER DILEMMA"

--2012--

Gracia Lazaroa C., Ferrer A., Ruiz G. et al. - "Heterogeneous networks do not promote cooperation when humans play a Prisoner’s Dilemma",  PNAS 109(32), 2012. Link

 


Progetto "SANIDAD"

--2011--

Ramos Garcia L.I., Almansa J.F. - "Technical Note: An algorithm to calculate the tissue phantom ratio from depth dose in radiosurgery", Medical Phisics 38(5), 2011. Link

 

 


 

wcg

WCG

SU/UP

 

Smash Childhood Cancer +HelpStopTb + OpenZika + Mapping Cancer Markers + Go Fight Against Malaria (completed) + Computing For Clean Water + Discovery Degnue Drugs (completed) + Drug Search for Leishmaniasis (completed) + FightAIDS (completed) + Genome Comparison (completed) + Help Conquer Cancer (completed) + Help Cure Muscolar Dystrophy (completed) + Help Defeat Cancer (completed) + Help Fight Childhood Cancer (completed) + Human Proteome Folding (completed) + Nutritious Rice for the World (completed) + Clean Energy Project

 

 

Progetto "Smash Childhood Cancer"

Fukuda M., Takatori A. et al. - "Effects of novel small compounds targeting TrkB on neuronal cell survival and depression-like behavior". Neochemis Intern 97, 2016. Link

 

Progetto "Help Stop TB"

--2016--

Meletiou A., Shannon G. et al. - "Utilising IBM’s World Community Grid (WCG) virtual supercomputer to model mycolic acids from Mycobacterium tuberculosis". Big Data in Biomolec Syst Confer, 2016. Link

 

 

Progetto "OpenZika"

--2017--

Mottin M. - "OpenZika: Opening the Discovery of New Antiviral candidates against Zika Virus and Insights into Dynamic behavior of NS3 Helicase". 46th World Chemist Congress, 2017. Link

Motin M., Braga R.C., Silva J.H. et al - "Molecular Dynamics simulations of Zika Virus NS3 helicase: Insights into RNA binding site activity". Biochem and Biophys Research Commun 492(4), 2017. Link

--2016--

Motim M., Perryman A.L. et al. - "OpenZika: an open science collaboration project to discover drug candidates against Zika virus". 8th Brazilian Symposium on Medicinal Chem, 2016. Link

Ekins S., Perryman A.L., Andrade C.H. - "OpenZika: An IBM World Community Grid Project to Accelerate Zika Virus Drug Discovery". PLOS Neglected Tropical Disease, 2016. Link

Ekins S., Andrade C.H. et al. - "Illustrating and homology modeling the proteins of the Zika virus". F1000 Research 5(275), 2016. Link

 

 

Progetto "Mapping Cancer Markers

Fortney K, Griesman J, Jurisica I. et al. - "Prioritizing therapeutics for lung cancer: An integrative meta-analysis of cancer gene signatures and chemogenomic data". Plos One 11(3), 2015. Link

Kotlyar M., Pastrello C., Jurisica I. et al. - "In silico prediction of physical protein interactions and characterization of interactome orphans". Nature Methods 12 (79-84), 2015. Link

Wong S., Cercone N. and Jurisica I. - "Comparative network analysis via differential graphlet communities". Proteomics 15 (2-3), 2015. Link

 

 

Progetto "Go Fight against Malaria"

Perryman A.L., Yu W., Wang X. et al - "A Virtual Screen Discovers Novel, Fragment-Sized Inhibitors of Mycobacterium tuberculosis InhA". J Chem Inform Model, 2015. Link

 

 

Progetto "Computing for Clean Water"

--2015--

Ma M., Grey F., Shen L. et al. - "Water transport inside carbon nanotubes mediated by phonon-induced oscillating friction". Nature Nanotech 10, 2015. Link

--2011--

Ming D. Ma, Shen L., Sheridan J., Liu Z.J. et al. - "Friction of water slipping in carbon nanotubes". Physical Review E 83, 2011. Link

 

 

Progetto "Discovery Dengue Drugs"

--2014--

Viswanathan U., Tomlinson S.M., Fonner J.M. et al. - "Identification of a Novel Inhibitor of Dengue Virus Protease through Use of a Virtual Screening Drug Discovery Web Portal". J. Chem. Inform. Model 54(10), 2014. Link

--2009--

Tomlinson S.M., Malmstrom R.D., Watowich S.J. – "New approaches to structure-based discovery of dengue protease inhibitors". Infect Disor. Drug Target 9(3), 2009. Link

 

 

Progetto "Drug Search for Leishmaniasis"

--2016--

Ochoa, R, et al. "Drug search for leishmaniasis: a virtual screening approach by grid computing." Journal of Computer-Aided Molecular Design30(7), 2016. Link

--2012--

Flórez A.F., Watowich S., Muskus C. - "Current Advances in Computational Strategies for Drug Discovery in Leishmaniasis". Current Topics in Tropical Medicine  cap.16, 2012. Link
 

 

Progetto "FightAIDS@Home"

-2015--

Gallicchio E., Xia J. et al. - "Asynchronous replica exchange software for grid and heterogeneous computing". Comp Phys Comunic 196, 2015. Link

Xia J., Flynn W., Gallicchio E. et al. - "Large-scale asynchronous and distributed multidimensional replica exchange molecular simulations and efficiency analysis". J of Comput Chemis 2015. Link

Forli S., Olson A.J.- "Computational Challenges of Structure-Based Approaches Applied to HIV". Current Topics in Microbiol. and Immunol. 389, 2015. Link

--2014--

Perryman A.L., Santiago D.N., Forli S., Santos-Martins D., Olson A.J. - "Virtual screening with AutoDock Vina and the common pharmacophore engine of a low diversity library of fragments and hits against the three allosteric sites of HIV integrase: participation in the SAMPL4 protein–ligand binding challenge". J. of Computer Aided Molecular Desing 28(4), 2014. Link

--2010--

Perryman A.L., Forli S., Morris G.M., Burt C., Cheng Y., Palmer M.J. et al. – "A dynamic model of HIV integrase inhibition and drug resistance". J. of Molecular Biology 397(2),  2010. Link

Cosconati S., Forli S., Perryman A.L., Harris R. et al. - "Virtual Screening with AutoDock: Theory and Practice". Expert Opin. Drug Discovery 5(6), 2010. Link

Perryman A.L., Zhang Q., Soutter H.H., Rosenfeld R., McRee D.E. et al. – "Fragment-Based Screen against HIV Protease". Chem. Biol. Drug Des. 75(3), 2010. Link

--2009--

Morris G.M., Huey R., Lindstrom W., Sanner M.F., Belew R.K. – "AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility". J. of Computer Chem. 30(16), 2009.  Link

--2007--

Chang M.W., Lindstrom W., Olson A.J., Belew R.K – "Analysis of HIV Wild-Type and Mutant Structures via in Silico Docking against Diverse Ligand Libraries". J. of Chemical Information and Modeling 47(3), 2007. Link

 


Progetto "Genome Comparison"

--2012--

Lifschitz S., Viana C.J.M., Tristão C., Marcos Catanho M. et al. - "Design and Implementation of ProteinWorldDB". Lecture Notes in Computer Science 7409, 2012. Link

--2010--

Otto T.D., Catanho M., Tristao C.,  – "ProteinWorldDB: querying radical pairwise alignments among protein sets from complete genomes". Oxford Journal of Bioinformatics 25(5), 2010.  Link

 

Progetto "Help Conquer Cancer"

--2012--

Kotseruba Y., Cumbaa C.A., Jurisica I. - "High-throughput protein crystallization on the World Community Grid and the GPU". J.Phys.Conf.Ser. 341, 2012. Link

--2010--

Cumbba C.A., Jurisica I. – "Protein crystallization analysis on the World Community Grid". J. Struct. Funct. Genomics 11(1), 2010. Link

--2008--

Snell E.H., Luft J.R., Potter S.A. et al. – "Establishing a training set through the visual analysis of crystallization trials. Part I: 150 000 images". Acta Crystal D Biol. 64(11), 2008.  Link

Snell E.H., Luft J.R., Potter S.A. et al. – "Establishing a training set through the visual analysis of crystallization trials. Part II: crystal examples".  Acta Crystal D Biol. 64(11), 2008. Link

 

Progetto "Help Cure Muscolar Dystrophy"

--2017--

Laine E., Carbone A. - "Protein social behavior makes a stronger signal for partner identification than surface geometry". Proteins 85(1), 2017.Link

--2016--

Vamparys L., Benoist L. et al. - "Great interactions: How binding incorrect partners can teach us about protein recognition and function". Proteins:Structure, Function and Bioinfor, 2016. Link

--2013--

Lopes A., Sacquin-Mora S., Dimitrova V., Laine E. et al. - "Protein-Protein Interactions in a Crowded Environment: An Analysis via Cross-Docking Simulations and Evolutionary Information". PLOS Computational Biology 9(12), 2013. Link

--2012--

Bard N., Bertis V, Bolze R, Despez F. - "A Volunteer Computing Platform Experience for Neuromuscular Disease Problems". Desktop Grid Computing Book, 2012. Link

--2009--

Bertis V., Bolze R., Desprez F., Reed K. – "From Dedicated Grid to Volunteer Grid: Large Scale Execution of a Bioinformatics Application". J. of Grid Computing 7(4), 2009. Link

Engelen S., Trojan L.A., Mora S.S., Lavery R., Carbone A. – "Joint Evolutionary Trees: A Large-Scale Method To Predict Protein Interfaces Based on Sequence Sampling". PLOS Comput. Biol. 5(1), 2009. Link

--2008--

Mora S.S., Carbone A., Lavery R. – "Identification of Protein Interaction Partners and Protein–Protein Interaction Sites". J of Molec Biology 382(5), 2008. Link

 

 

Progetto "Help Defeat Cancer"

--2011--

Foran D.J., Yang L., Chen W., Hu J., Goodell L.A., Reiss M. et al. - "ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology". Journal of the American Medical Informatics Association 18(4), 2011. Link

--2010--

Widener P., Chen W., Wang F., Yang L. et al. - "Grid-Enabled, High-performance Microscopy Image Analysis". 2010. Link

--2009--

Yang L., Chen W., Meer P., Salaru G. et al. – "Virtual Microscopy and Grid-enabled Decision Support for Large Scale Analysis of Imaged Pathology Specimens". IEEE Trans Inf. Technol. Biomed. 13(4), 2009. Link

Yang L., Chen W., Meer P., Salaru G. et al. – "PathMiner: A Web-Based Tool for Computer-Assisted Diagnostics in Pathology". IEEE Trans Inf. Technol. Biomed. 13(3),  2009. Link

--2008--

DiPaola R., Dvorzhinski D., Thalasila A. et al. – "Therapeutic starvation and autophagy in prostate cancer: A new paradigm for targeting metabolism in cancer therapy". Prostate 68(16), 2008.  Link

 

 

Progetto "Help Fight Childhood Cancer"

--2016--

Fukuda M., Takatori A. et al. - "Effects of novel small compounds targeting TrkB on neuronal cell survival and depression-like behavior". Neurochem Internat 97, 2016. Link

--2014--

Yohko Nakamura Y., Suganami A., Fukuda M., Hasan K. et al. - "Identification of novel candidate compounds targeting TrkB to induce apoptosis in neuroblastoma". Cancer Medicine 3(1), 2014. Link

 

 

Progetto "Human Proteome Folding"

--2012--

Baltz A.G., Munschauer M., Schwanhäusser B., Vasile A., Murakawa Y. et al. - "The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts". Molecular Cell 46(5), 2012.  Link

Pentony M.M., Winters P., Penfold-Brown D., Drew K, Narechania A. - "The Plant Proteome Folding Project: Structure and Positive Selection in Plant Protein Families". Genome Biology and Evolution 4(3), 2012.  Link

--2011--

Drew K., Winters P., Butterfoss G.L. et al. - "The proteome folding project: Proteome-scale prediction of structure and function". Genome Research 21(11), 2011. Link

--2008--

Boxem M., Maliga Z., Klitgord N. et al – "A Protein Domain-Based Interactome Network for C. elegans Early Embryogenesis".  Cell 134(3), 2008. Link

--2007--

Bonneau R., Facciotti M.T., Reiss D.J. et al – "A Predictive Model for Transcriptional Control of Physiology in a Free Living Cell". Cell 131(7), 2007.  Link

Malmstrom L., Riffle M., Strauss C.E., Chivian D., Baker D. et al. – "Superfamily Assignments for the Yeast Proteome through Integration of Structure Prediction with the Gene Ontology", PLOS Comput. Biol 5(4), 2007. Link

Nissen E.A., Smith K.D., Bonneau R., Strong R.K., Aderem A. – "A conserved surface on Toll-like receptor 5 recognizes bacterial flagellin". J. of Experimental Medicine 204(2), 2007. Link

--2006--

Avila-Campillo I., Drew K., Lin J., Reiss D.J., Bonneau R.  – "BioNetBuilder: automatic integration of biological networks". Bioinformatics 23(3), 2006. Link

Malmstrom L. – "Genome-wide structural and functional protein characterization by ab initio protein structure prediction". Lund University Press 4(5), 2006. Link

 

 

Progetto "Nutritious Rice for the World"

--2017--

Hung L.H., Samudrala R. - "Rice protein models from the Nutritious Rice for the World Project" (In Press). Link

--2014--

Hung L.H., Samudrala R. - "Fast protein cluster: parallel and optimized clustering of large-scale protein modeling data". Bioinformatics, 2014. Link

--2012--

Hung LH., Samudrala R. - "Accelerated protein structure comparison using TM-score-GPU". Bioinformatics 28(16), 2012. Link

--2011--

Hung L.H., Guerquin M., Samudrala R. - "GPU-Q-J, a fast method for calculating root mean square deviation (RMSD) after optimal superposition". BioMed Central Research Notes 4(97), 2011.Link

 


Progetto "Clean Energy Project"

--2017--

Lopez S.A. - "Identification of next-generation materials for organic solar cells via a collaborative theory-experimental approach". ICNM Seminars, 2017. Link

--2015--

Pyzer-Knapp E.O., Suh C. et al. - "What Is High-Throughput Virtual Screening? A Perspective from Organic Materials Discovery". Annual Rev of Materials Research 45, 2015. Link

Pyzer-Knapp E., Li K., Aspuru-Guzik A. - "Learning from the Harvard Clean Energy Project: The Use of Neural Networks to Accelerate Materials Discovery". Advanced Functional Materials 25(36),  2015. Link

--2013--

Hachmann J., Olivares-Amaya R., Jinich A., Appleton A.L., Blood-Forsythe M. et al. - "Lead candidates for high-performance organic photovoltaics from high-throughput quantum chemistry - Harvard Clean Energy Project". Energy & Environmental Science 7, 2013. Link

--2011--

Hachmann J., Olivares-Amaya R. et al. - "Design principles and top non-fullerene acceptor candidates for organic photovoltaics using the Harvard clean energy project". J of Phys Chem 2(17), 2011. Link

Hachmann J., Olivares-Amaya R. et al. - "Accelerated computational discovery of high-performance materials for organic photovoltaics by means of cheminformatics". Energy & Environmental Science 12, 2011. Link

Hachmann J., Olivares-Amaya R. et al. - "The Harvard Clean Energy Project: Large-Scale Computational Screening and Design of Organic Photovoltaics on the World Community Grid". Physical Chemistry Letters 2(17), 2011. Link

Sokolov A.N., Atahan-Evrenk S., Mondal R., Akkerman HB et al. - "From computational discovery to experimental characterization of a high hole mobility organic crystal". Nature Communications 2, 2011. Link

 


yoyo

Yoyo@Home

SU/UP

Evolution + ORG + Muon + Harmonious Trees

 

Progetto "Evolution"

--2010-- 

Waxman D., Loewe L. - “A stochastic model for a single click of Muller’s ratchet”.  Journal of theoretical Biology, 2010.Link

--2008--

Loewe L., Charlesworth B. - "Quantifying the threat from Muller's ratchet in the Amazon molly (Poecilia Formosa)". BMC Evolutionary Biology 8(88), 2008. Link

Loewe L., Cutter A. - "On the potential for extinction by Muller’s Ratchet in Caenorhabditis Elegans", BMC Evolutionary Biology 8(125), 2008. Link

Loewe L. - "Evolution@home: The first global computing system for evolutionary biology". Distributed & Grid Computing Book, 2008. 

--2007--

Loewe L. - "Evolution@home: observations on participant choice, work unit variation and low-effort global computing". Software Practice & Experience 37, 2007. Link

--2006--

Loewe L. - "Quantifying the genomic decay paradox due to Muller's ratchet in human mitochondrial DNA". Genetics Research 87, 2006. Link

--2005--

Loewe L. - "Evolution@home: Global computing quantifies evolution due to Muller's ratchet", BMC Bioinformatics 6(3), 2005. Link

--2002--

Loewe L. - "Evolution@home: Experiences with Work Units That Span More than 7 Orders of Magnitude in Computational Complexity". 2nd IEEE/ACM Internat Sympos on Cluster Computing and Grid, 2002. Link

Loewe L. - "Global computing for bioinformatics". Briefings in Bioinformatics 3(4), 2002. Link

 

Progetto "ORG"

Gerbicz R. - "All solutions of the Diophantine equation a^6+b^6=c^6+d^6+e^6+f^6+g^6 for a,b,c,d,e,f,g < 250000 found with a distributed Boinc project". Arvix, 2011. Link

 

Progetto "Muon"

--2010--

Brooks S. -"Muon Capture Schemes for the Neutrino Factory". Degree Thesis, 2010. Link

--2006--

Brooks S. - "Secondary particle production and capture for muon accelerator applications". 10th Europ Particle Acceler Conf, 2006. Link

Brooks S. - "Muon1 Distributed Particle Accelerator Design". 2006. Link

 

Progetto "Harmonious Tree"

Fang W., Beckert U. - "Parallel Tree Search in Volunteer Computing: a Case Study". J of Grid Computing 15, 2017. Link



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Written on 21/05/2018, 21:55 by boboviz
nuovo-client-boinc-7-10-2Oggi è stato ufficialmente rilasciato il nuovo client Boinc, la versione 7.10.2 Qui la lista delle modifiche rispetto alla versione precedente.

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Written on 19/06/2017, 14:38 by boboviz
addio-lugano-bellaCari sodali scaccolatori,come alcuni di voi sanno, il sottoscritto, oltre ad essere appassionato di Boinc, è anche "appassionato" di HPC e, visto che il...